Wall clock time and date at job start Sun Mar 29 2020 21:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.62440 * 2 1 4 4 C 1.52011 * 109.78873 * 239.51889 * 2 1 3 5 5 N 1.46838 * 104.51066 * 133.88526 * 4 2 1 6 6 C 1.46904 * 110.99896 * 225.72120 * 5 4 2 7 7 C 1.50702 * 109.47031 * 169.99892 * 6 5 4 8 8 H 1.07993 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99881 * 180.02562 * 7 6 5 10 10 N 1.31523 * 120.00333 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00165 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47200 * 89.99703 * 11 9 7 13 13 H 1.48497 * 109.47314 * 209.99588 * 11 9 7 14 14 H 1.48499 * 109.47164 * 329.99906 * 11 9 7 15 15 C 1.39457 * 117.27595 * 96.68650 * 5 4 2 16 16 C 1.55076 * 110.08324 * 295.56490 * 15 5 4 17 17 S 1.79569 * 109.79343 * 71.51714 * 16 15 5 18 18 O 1.42105 * 109.47026 * 153.92212 * 17 16 15 19 19 C 1.54480 * 109.62839 * 120.37969 * 2 1 3 20 20 H 1.08989 * 109.47370 * 299.61702 * 1 2 3 21 21 H 1.09004 * 109.46940 * 59.62034 * 1 2 3 22 22 H 1.09001 * 109.46788 * 179.61717 * 1 2 3 23 23 H 1.08993 * 110.41725 * 252.62969 * 4 2 1 24 24 H 1.08995 * 110.41821 * 15.13698 * 4 2 1 25 25 H 1.08994 * 109.46800 * 290.00219 * 6 5 4 26 26 H 1.08998 * 109.46939 * 49.99946 * 6 5 4 27 27 H 0.96993 * 120.00473 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.36819 * 55.74770 * 15 5 4 29 29 H 1.08994 * 109.36932 * 175.37502 * 15 5 4 30 30 H 1.09003 * 109.41463 * 311.42063 * 16 15 5 31 31 H 1.08993 * 109.41861 * 191.62041 * 16 15 5 32 32 H 1.09000 * 109.35406 * 38.45368 * 19 2 1 33 33 H 1.08991 * 109.24627 * 278.79482 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0268 0.0000 4 6 2.0446 -0.7255 -1.2327 5 7 3.0964 0.1510 -1.7632 6 6 2.9649 0.3104 -3.2176 7 6 3.8958 1.3973 -3.6901 8 1 4.5220 1.9179 -2.9808 9 6 3.9471 1.7277 -5.0276 10 7 3.1840 1.0940 -5.8914 11 14 5.1014 3.0745 -5.6134 12 1 6.4166 2.4811 -5.9647 13 1 4.5222 3.7373 -6.8094 14 1 5.2831 4.0758 -4.5319 15 6 4.4128 -0.1440 -1.4097 16 6 4.6041 0.0252 0.1198 17 16 3.7618 -1.3016 0.9885 18 8 4.3898 -1.5191 2.2445 19 6 2.0489 -0.7359 1.2552 20 1 -0.3633 0.5078 0.8933 21 1 -0.3633 0.5197 -0.8866 22 1 -0.3633 -1.0277 -0.0069 23 1 2.4603 -1.6948 -0.9575 24 1 1.2455 -0.8465 -1.9640 25 1 3.2214 -0.6274 -3.7105 26 1 1.9375 0.5801 -3.4622 27 1 3.2204 1.3262 -6.8324 28 1 4.6408 -1.1721 -1.6910 29 1 5.0881 0.5310 -1.9354 30 1 4.1899 0.9836 0.4330 31 1 5.6675 -0.0039 0.3574 32 1 1.4117 -1.5965 1.4587 33 1 2.0214 -0.0564 2.1070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307756603.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:40 Heat of formation + Delta-G solvation = -52.213078 kcal Electronic energy + Delta-G solvation = -14918.071035 eV Core-core repulsion = 12490.701425 eV Total energy + Delta-G solvation = -2427.369611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72870 -36.75664 -35.90186 -34.50278 -31.65291 -29.02066 -28.19582 -26.33848 -24.60188 -21.87204 -21.17735 -18.50017 -18.19213 -17.16602 -16.71618 -16.35462 -16.25889 -15.72949 -14.92944 -14.70069 -14.27237 -14.10243 -13.90392 -13.54693 -13.15517 -13.13614 -12.91880 -12.73001 -12.49287 -12.16718 -12.01301 -11.70539 -11.59245 -11.52626 -11.03993 -10.89703 -10.54180 -9.07542 -8.66615 -8.13825 -6.21713 0.52875 1.43734 1.45303 1.55009 1.75978 2.44286 2.77413 3.19375 3.36472 3.86414 3.99723 4.10449 4.27255 4.37660 4.52443 4.56047 4.72201 4.88187 4.92955 5.00490 5.10535 5.14894 5.28796 5.39942 5.44971 5.52434 5.56237 5.75185 6.17753 6.53793 6.92638 7.09823 7.47673 8.96109 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.007468 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.408759 B = 3748.568920 C = 4252.960232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 H 0.067 0.933 4 C 0.049 3.951 5 N -0.580 5.580 6 C 0.214 3.786 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.956 3.044 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.118 3.882 16 C -0.440 4.440 17 S 1.263 4.737 18 O -0.928 6.928 19 C -0.423 4.423 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.082 0.918 25 H -0.023 1.023 26 H 0.011 0.989 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 -5.668 8.935 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 H 0.086 0.914 4 C -0.079 4.079 5 N -0.305 5.305 6 C 0.089 3.911 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.782 3.218 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.013 4.013 16 C -0.579 4.579 17 S 1.466 4.534 18 O -0.924 6.924 19 C -0.561 4.561 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.101 0.899 25 H -0.005 1.005 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.161 0.839 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.099 -6.129 9.284 11.548 hybrid contribution 0.720 2.182 0.333 2.322 sum -2.379 -3.947 9.617 10.664 Atomic orbital electron populations 1.21847 0.93466 1.02926 1.01522 1.21199 0.96934 0.99086 0.91062 0.91407 1.22487 0.94557 0.94285 0.96556 1.57865 1.04694 1.53594 1.14325 1.19363 0.95815 0.94122 0.81834 1.21609 1.22819 1.19378 0.92628 0.91967 1.25738 0.97437 0.98765 0.97159 1.70049 1.40775 1.43192 1.02956 0.85581 0.79066 0.79440 0.77689 1.19982 1.21092 1.19571 1.20338 0.90775 1.00086 0.90115 1.27830 1.09474 1.14933 1.05674 1.69711 0.85841 1.01145 0.96707 1.92927 1.73789 1.78483 1.47175 1.28095 1.16566 1.08490 1.02984 0.92572 0.93035 0.90568 0.90053 0.89950 1.00487 0.97083 0.92826 0.94159 0.90596 0.89438 0.87513 0.83880 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.88 71.98 0.64 -2.28 16 2 C -0.06 -1.56 2.53 -10.62 -0.03 -1.58 16 3 H 0.07 2.04 7.44 -2.38 -0.02 2.03 16 4 C 0.05 1.33 5.18 85.99 0.45 1.78 16 5 N -0.58 -21.26 3.39 -916.96 -3.11 -24.36 16 6 C 0.21 10.13 4.65 85.56 0.40 10.53 16 7 C -0.53 -27.70 8.26 25.60 0.21 -27.49 16 8 H 0.06 3.24 6.57 -2.91 -0.02 3.22 16 9 C 0.01 0.40 5.46 84.65 0.46 0.87 16 10 N -0.93 -53.03 13.29 21.45 0.28 -52.75 16 11 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.12 3.98 5.02 88.35 0.44 4.43 16 16 C -0.44 -12.92 6.00 72.69 0.44 -12.48 16 17 S 1.26 32.20 11.47 -56.49 -0.65 31.56 16 18 O -0.93 -34.52 18.14 -148.98 -2.70 -37.22 16 19 C -0.42 -9.35 6.05 72.49 0.44 -8.91 16 20 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.05 1.19 8.14 -2.38 -0.02 1.18 16 22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.08 1.69 6.04 -2.76 -0.02 1.68 16 24 H 0.08 2.32 7.07 -2.39 -0.02 2.31 16 25 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 26 H 0.01 0.57 7.86 -2.39 -0.02 0.55 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.04 1.21 8.12 -2.39 -0.02 1.19 16 29 H 0.08 2.99 5.76 -2.39 -0.01 2.98 16 30 H 0.09 2.73 7.88 -2.47 -0.02 2.72 16 31 H 0.11 3.04 8.14 -2.47 -0.02 3.02 16 32 H 0.14 2.35 7.98 -2.39 -0.02 2.33 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -68.21 271.02 0.38 -67.83 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.07 Total: 5.30 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.45 Total: -35.14 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.82 Total: -77.11 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -2.70 Total: -37.22 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 32.20 SS G_CDS: -0.65 Total: 31.56 kcal Total: -68.21 0.38 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307756603.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.620 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds