Wall clock time and date at job start Sun Mar 29 2020 22:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 115.55256 * 2 1 4 4 N 1.46492 * 109.47317 * 274.72961 * 3 2 1 5 5 C 1.38857 * 119.99767 * 184.05678 * 4 3 2 6 6 C 1.39567 * 119.84331 * 180.02562 * 5 4 3 7 7 C 1.36336 * 120.16216 * 179.97438 * 6 5 4 8 8 C 1.40884 * 119.83740 * 0.02562 * 7 6 5 9 9 C 1.41142 * 120.15670 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99610 * 154.75608 * 9 8 7 11 11 C 1.39860 * 119.99985 * 334.75953 * 9 8 7 12 12 N 1.30909 * 119.99982 * 342.87186 * 11 9 8 13 13 Si 1.86795 * 120.00470 * 162.87720 * 11 9 8 14 14 H 1.48503 * 109.47127 * 89.99198 * 13 11 9 15 15 H 1.48493 * 109.47763 * 209.99677 * 13 11 9 16 16 H 1.48503 * 109.46744 * 329.99943 * 13 11 9 17 17 C 1.40889 * 119.68817 * 0.27048 * 8 7 6 18 18 C 1.36339 * 119.83314 * 359.44489 * 17 8 7 19 19 C 1.52994 * 117.51702 * 145.70929 * 2 1 3 20 20 C 1.52998 * 60.00349 * 107.47858 * 19 2 1 21 21 H 1.09004 * 109.46972 * 302.20802 * 1 2 3 22 22 H 1.09001 * 109.47261 * 62.20472 * 1 2 3 23 23 H 1.08997 * 109.47201 * 182.20411 * 1 2 3 24 24 H 1.09001 * 109.46777 * 154.72607 * 3 2 1 25 25 H 1.09007 * 109.46454 * 34.73316 * 3 2 1 26 26 H 0.96998 * 120.00430 * 4.05084 * 4 3 2 27 27 H 1.08005 * 119.91760 * 359.97438 * 6 5 4 28 28 H 1.08008 * 120.08166 * 179.97438 * 7 6 5 29 29 H 0.96996 * 120.00318 * 180.02562 * 12 11 9 30 30 H 1.07998 * 120.07649 * 179.70227 * 17 8 7 31 31 H 1.08001 * 119.91578 * 180.27809 * 18 17 8 32 32 H 1.09003 * 117.49816 * 214.96617 * 19 2 1 33 33 H 1.09005 * 117.49957 * 359.97438 * 19 2 1 34 34 H 1.09005 * 117.49833 * 252.51143 * 20 19 2 35 35 H 1.08996 * 117.49776 * 107.48843 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.2978 1.8701 -1.3764 5 6 2.9430 3.0717 -1.6372 6 6 3.0435 3.5355 -2.9497 7 6 3.6751 4.7146 -3.2131 8 6 4.2276 5.4652 -2.1566 9 6 4.8825 6.6871 -2.4215 10 1 4.9430 7.4447 -1.6542 11 6 5.4530 6.9167 -3.6777 12 7 5.6825 5.9127 -4.4857 13 14 5.8875 8.6560 -4.2024 14 1 7.2801 8.9644 -3.7890 15 1 5.7723 8.7713 -5.6783 16 1 4.9556 9.6151 -3.5567 17 6 4.1279 4.9877 -0.8348 18 6 3.4883 3.8097 -0.5856 19 6 2.2368 -1.1210 0.7644 20 6 2.2364 -1.1207 -0.7655 21 1 -0.3633 0.5478 0.8696 22 1 -0.3634 0.4792 -0.9091 23 1 -0.3633 -1.0269 0.0395 24 1 3.1851 1.3073 0.4388 25 1 1.5846 2.0724 0.5856 26 1 1.9187 1.3550 -2.1057 27 1 2.6199 2.9588 -3.7587 28 1 3.7525 5.0721 -4.2294 29 1 6.0785 6.0719 -5.3567 30 1 4.5533 5.5556 -0.0206 31 1 3.4072 3.4447 0.4276 32 1 3.1721 -0.8752 1.2675 33 1 1.6119 -1.8587 1.2680 34 1 1.6111 -1.8582 -1.2688 35 1 3.1712 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309126713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:22 Heat of formation + Delta-G solvation = 22.357877 kcal Electronic energy + Delta-G solvation = -15327.468058 eV Core-core repulsion = 12903.721230 eV Total energy + Delta-G solvation = -2423.746828 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05782 -38.97787 -36.21840 -34.41415 -31.52768 -30.59627 -29.47287 -27.55751 -25.62821 -23.29086 -22.87067 -21.96205 -20.00460 -19.07052 -17.67391 -17.14810 -16.47473 -16.03995 -15.67000 -15.23791 -14.60664 -14.38682 -14.19164 -13.95640 -13.75948 -13.53319 -13.22280 -12.98089 -12.75066 -12.62778 -12.36262 -12.24162 -11.99857 -11.58575 -11.22307 -11.15261 -11.02037 -10.67246 -10.27920 -9.40686 -8.54159 -8.14995 -6.00991 1.10172 1.18657 1.40578 1.52932 1.59719 2.28172 2.60376 2.85040 3.21054 3.75125 3.82444 3.86780 4.07548 4.11378 4.45127 4.47798 4.68210 4.76204 4.79604 4.94984 4.99744 5.02502 5.05409 5.12472 5.19166 5.28515 5.31670 5.38678 5.42143 5.74007 5.76661 5.92618 6.18503 6.41322 6.68131 6.88275 7.08739 7.14127 7.31641 8.49376 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.065382 B = 0.004777 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.147357 B = 5860.009158 C = 5983.626314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.148 4.148 3 C 0.172 3.828 4 N -0.747 5.747 5 C 0.113 3.887 6 C -0.175 4.175 7 C -0.140 4.140 8 C 0.034 3.966 9 C -0.507 4.507 10 H 0.067 0.933 11 C 0.032 3.968 12 N -0.844 5.844 13 Si 0.977 3.023 14 H -0.265 1.265 15 H -0.268 1.268 16 H -0.261 1.261 17 C -0.197 4.197 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.172 4.172 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.394 0.606 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.282 0.718 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 -10.951 5.764 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.148 4.148 3 C 0.048 3.952 4 N -0.382 5.382 5 C 0.013 3.987 6 C -0.197 4.197 7 C -0.160 4.160 8 C 0.032 3.968 9 C -0.539 4.539 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.472 5.472 13 Si 0.799 3.201 14 H -0.190 1.190 15 H -0.193 1.193 16 H -0.185 1.185 17 C -0.217 4.217 18 C -0.192 4.192 19 C -0.194 4.194 20 C -0.209 4.209 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.228 0.772 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.255 -11.019 5.752 14.392 hybrid contribution 0.423 0.723 -0.676 1.077 sum -6.831 -10.296 5.076 13.358 Atomic orbital electron populations 1.21282 0.90716 1.02555 1.01972 1.21651 0.95745 0.89771 1.07677 1.20604 0.98145 0.92644 0.83830 1.43930 1.65100 1.21772 1.07381 1.17480 0.99543 0.88995 0.92641 1.20233 1.06321 0.98606 0.94582 1.20870 0.99880 0.96176 0.99050 1.17819 0.93169 0.94110 0.91737 1.19589 1.33819 1.01606 0.98856 0.91441 1.26611 0.93242 1.02386 0.95721 1.69914 1.34096 1.33857 1.09341 0.85289 0.79162 0.77717 0.77977 1.18966 1.19255 1.18545 1.20766 1.06685 0.97996 0.96261 1.20104 1.05067 0.96958 0.97044 1.23137 1.02178 0.99894 0.94189 1.23004 1.02210 1.00664 0.95010 0.91913 0.92799 0.90903 0.94053 0.93456 0.77180 0.87520 0.88130 0.90756 0.88662 0.86995 0.88958 0.86718 0.87335 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.69 71.98 0.70 -1.26 16 2 C -0.15 -3.14 2.16 -52.18 -0.11 -3.25 16 3 C 0.17 4.88 4.88 86.38 0.42 5.30 16 4 N -0.75 -25.35 5.60 -339.00 -1.90 -27.25 16 5 C 0.11 4.94 6.67 38.67 0.26 5.20 16 6 C -0.18 -8.37 9.82 22.15 0.22 -8.16 16 7 C -0.14 -7.68 8.63 22.47 0.19 -7.49 16 8 C 0.03 1.97 5.57 -21.27 -0.12 1.85 16 9 C -0.51 -29.06 9.03 23.38 0.21 -28.85 16 10 H 0.07 3.75 7.90 -2.91 -0.02 3.72 16 11 C 0.03 1.71 5.14 85.22 0.44 2.15 16 12 N -0.84 -46.72 10.95 21.82 0.24 -46.48 16 13 Si 0.98 40.59 29.59 68.60 2.03 42.62 16 14 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 15 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 17 C -0.20 -10.17 9.74 22.48 0.22 -9.95 16 18 C -0.17 -7.73 9.21 22.15 0.20 -7.53 16 19 C -0.16 -2.79 9.88 30.59 0.30 -2.49 16 20 C -0.17 -3.40 9.74 30.59 0.30 -3.10 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.04 8.11 -2.39 -0.02 1.02 16 24 H 0.04 1.24 7.47 -2.39 -0.02 1.23 16 25 H 0.05 1.37 8.04 -2.38 -0.02 1.36 16 26 H 0.39 12.15 8.37 -92.71 -0.78 11.37 16 27 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 28 H 0.10 5.80 6.17 -2.91 -0.02 5.78 16 29 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 30 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.11 4.46 6.67 -2.91 -0.02 4.45 16 32 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 33 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -61.77 293.55 3.90 -57.87 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.30 Total: 30.81 kcal Atomic # 6 Polarization: -60.80 SS G_CDS: 3.23 Total: -57.57 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.66 Total: -73.74 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -61.77 3.90 -57.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309126713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.232 kcal (2) G-P(sol) polarization free energy of solvation -61.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds