Wall clock time and date at job start Sun Mar 29 2020 21:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86800 * 120.00247 * 2 1 4 4 H 1.48502 * 109.46990 * 240.00130 * 3 2 1 5 5 H 1.48498 * 109.46744 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47172 * 120.00089 * 3 2 1 7 7 C 1.39960 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99648 * 185.43310 * 7 2 1 9 9 C 1.41068 * 120.00404 * 5.42222 * 7 2 1 10 10 C 1.40742 * 120.29492 * 34.42207 * 9 7 2 11 11 C 1.36466 * 119.94045 * 179.74712 * 10 9 7 12 12 C 1.38865 * 120.57826 * 0.27029 * 11 10 9 13 13 C 1.38222 * 120.61453 * 0.02562 * 12 11 10 14 14 C 1.38642 * 120.03674 * 359.97330 * 13 12 11 15 15 N 1.39125 * 120.28820 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99684 * 25.66899 * 15 14 13 17 17 O 1.21283 * 120.00311 * 356.24933 * 16 15 14 18 18 C 1.50702 * 120.00126 * 176.25622 * 16 15 14 19 19 C 1.52998 * 117.49999 * 248.74949 * 18 16 15 20 20 C 1.52993 * 117.50260 * 180.08470 * 18 16 15 21 21 H 0.96996 * 119.99575 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.02994 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.70956 * 180.25471 * 11 10 9 24 24 H 1.08002 * 119.69228 * 179.97438 * 12 11 10 25 25 H 1.08007 * 119.98337 * 179.97438 * 13 12 11 26 26 H 0.96996 * 119.99934 * 205.66711 * 15 14 13 27 27 H 1.09008 * 115.54770 * 34.40995 * 18 16 15 28 28 H 1.09003 * 117.50050 * 359.97438 * 19 18 16 29 29 H 1.08997 * 117.50657 * 145.01816 * 19 18 16 30 30 H 1.09004 * 117.50236 * 214.97417 * 20 18 16 31 31 H 1.09001 * 117.49665 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0964 1.6963 1.2124 7 6 2.0083 -1.2121 -0.0005 8 1 3.0846 -1.2143 0.0880 9 6 1.3077 -2.4310 -0.1165 10 6 0.1451 -2.5094 -0.9059 11 6 -0.5241 -3.6935 -1.0172 12 6 -0.0716 -4.8258 -0.3526 13 6 1.0639 -4.7738 0.4337 14 6 1.7635 -3.5841 0.5647 15 7 2.9069 -3.5257 1.3552 16 6 3.6340 -4.6397 1.5715 17 8 3.2554 -5.7056 1.1341 18 6 4.9177 -4.5609 2.3572 19 6 6.2255 -4.7971 1.5992 20 6 5.6985 -5.8597 2.5669 21 1 -0.4849 0.8400 0.0004 22 1 -0.2145 -1.6343 -1.4267 23 1 -1.4135 -3.7504 -1.6272 24 1 -0.6126 -5.7554 -0.4504 25 1 1.4065 -5.6606 0.9464 26 1 3.1807 -2.6834 1.7505 27 1 4.9297 -3.8302 3.1660 28 1 6.1576 -5.0100 0.5323 29 1 7.0981 -4.2224 1.9095 30 1 6.2247 -5.9835 3.5135 31 1 5.2836 -6.7714 2.1369 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336612297.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:40 Heat of formation + Delta-G solvation = -9.108275 kcal Electronic energy + Delta-G solvation = -15524.539970 eV Core-core repulsion = 12963.595573 eV Total energy + Delta-G solvation = -2560.944398 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35688 -39.23282 -37.02694 -35.47647 -35.43735 -31.50977 -30.43035 -27.24640 -25.51547 -23.33298 -23.18305 -22.15489 -20.78542 -19.23962 -18.40129 -17.95951 -16.93002 -16.25191 -16.10426 -15.65025 -15.40209 -14.72325 -14.47778 -14.12984 -13.61616 -13.47458 -13.09228 -12.86358 -12.74171 -12.41132 -12.15948 -12.02539 -11.58416 -11.47813 -11.41040 -11.06460 -11.05853 -10.39379 -9.27381 -8.78704 -8.47535 -6.34717 0.80184 1.04520 1.42383 1.53203 1.53638 1.72894 2.23684 2.37737 2.80245 2.97735 3.68170 3.78285 3.91423 4.03511 4.25222 4.51704 4.63925 4.74915 4.75496 4.92802 5.03033 5.10971 5.20434 5.26102 5.30472 5.43758 5.79585 5.83000 6.11908 6.15517 6.25368 6.64210 6.76347 6.95110 7.01492 7.39219 8.42417 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.021934 B = 0.009170 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.260582 B = 3052.812523 C = 4201.826955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.069 3.931 10 C -0.161 4.161 11 C -0.125 4.125 12 C -0.219 4.219 13 C -0.124 4.124 14 C 0.018 3.982 15 N -0.632 5.632 16 C 0.519 3.481 17 O -0.578 6.578 18 C -0.202 4.202 19 C -0.142 4.142 20 C -0.141 4.141 21 H 0.285 0.715 22 H 0.106 0.894 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.414 0.586 27 H 0.150 0.850 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 -1.362 4.795 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.100 0.900 9 C 0.066 3.934 10 C -0.181 4.181 11 C -0.144 4.144 12 C -0.239 4.239 13 C -0.144 4.144 14 C -0.077 4.077 15 N -0.273 5.273 16 C 0.309 3.691 17 O -0.459 6.459 18 C -0.223 4.223 19 C -0.179 4.179 20 C -0.178 4.178 21 H 0.096 0.904 22 H 0.124 0.876 23 H 0.131 0.869 24 H 0.134 0.866 25 H 0.141 0.859 26 H 0.251 0.749 27 H 0.168 0.832 28 H 0.099 0.901 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.008 -1.934 4.519 10.262 hybrid contribution -0.231 1.093 -0.080 1.120 sum 8.777 -0.841 4.439 9.872 Atomic orbital electron populations 1.69859 1.08887 1.30294 1.37562 1.26712 0.95571 1.04243 0.91383 0.85201 0.78513 0.75599 0.80092 1.18853 1.19929 1.17728 1.19477 0.94983 0.90518 1.47667 0.90023 1.17751 0.93788 0.92129 0.89780 1.20946 0.98780 0.96720 1.01625 1.20754 0.99689 0.93326 1.00620 1.20720 0.99589 0.98321 1.05268 1.21226 0.95245 0.97185 1.00755 1.18113 0.92432 0.96332 1.00835 1.42917 1.24057 1.12260 1.48071 1.20574 0.85417 0.83024 0.80097 1.90537 1.71842 1.30195 1.53374 1.22227 0.89844 1.05919 1.04310 1.23056 0.94590 1.02374 0.97905 1.23035 1.00649 0.91713 1.02432 0.90412 0.87585 0.86872 0.86628 0.85940 0.74899 0.83215 0.90098 0.84492 0.84739 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.14 10.97 21.83 0.24 -42.90 16 2 C 0.03 1.66 5.31 85.26 0.45 2.11 16 3 Si 0.98 36.55 29.56 68.60 2.03 38.58 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.25 -8.81 7.11 99.48 0.71 -8.11 16 7 C -0.50 -25.25 8.18 23.38 0.19 -25.06 16 8 H 0.08 3.89 7.48 -2.91 -0.02 3.86 16 9 C 0.07 3.71 5.51 -21.18 -0.12 3.59 16 10 C -0.16 -8.58 8.57 22.47 0.19 -8.39 16 11 C -0.13 -6.07 9.97 22.01 0.22 -5.85 16 12 C -0.22 -10.46 10.04 22.42 0.22 -10.24 16 13 C -0.12 -6.24 8.78 22.36 0.20 -6.04 16 14 C 0.02 0.90 6.48 38.88 0.25 1.15 16 15 N -0.63 -26.60 5.10 -302.28 -1.54 -28.14 16 16 C 0.52 20.09 7.50 87.66 0.66 20.75 16 17 O -0.58 -26.42 13.18 -3.04 -0.04 -26.46 16 18 C -0.20 -5.31 6.19 -11.54 -0.07 -5.38 16 19 C -0.14 -3.07 10.24 30.62 0.31 -2.76 16 20 C -0.14 -3.10 10.05 30.62 0.31 -2.80 16 21 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 22 H 0.11 5.85 6.47 -2.91 -0.02 5.83 16 23 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 24 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 25 H 0.12 6.16 5.53 -2.91 -0.02 6.15 16 26 H 0.41 15.60 7.75 -92.71 -0.72 14.89 16 27 H 0.15 3.05 8.14 -2.38 -0.02 3.03 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.08 2.27 7.67 -2.39 -0.02 2.26 16 Total: -1.00 -63.79 268.83 3.94 -59.85 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.43 Total: 37.97 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 2.82 Total: -38.91 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.30 Total: -71.04 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.04 Total: -26.46 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -63.79 3.94 -59.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336612297.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.745 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds