Wall clock time and date at job start Sun Mar 29 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34555 * 119.18910 * 2 1 4 4 C 1.46897 * 118.65074 * 179.97438 * 3 2 1 5 5 N 1.31797 * 121.29830 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00355 * 172.19580 * 5 4 3 7 7 H 1.08996 * 109.46906 * 52.21694 * 6 5 4 8 8 C 1.53002 * 109.47212 * 172.21468 * 6 5 4 9 9 C 1.50698 * 109.47301 * 292.21369 * 6 5 4 10 10 H 1.08000 * 119.99867 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00171 * 180.27167 * 9 6 5 12 12 N 1.31512 * 120.00273 * 179.72418 * 11 9 6 13 13 Si 1.86808 * 119.99926 * 359.73201 * 11 9 6 14 14 H 1.48494 * 109.47215 * 89.99619 * 13 11 9 15 15 H 1.48498 * 109.46884 * 209.99889 * 13 11 9 16 16 H 1.48504 * 109.46670 * 329.99606 * 13 11 9 17 17 C 1.47855 * 117.40975 * 0.27311 * 4 3 2 18 18 C 1.43203 * 120.88454 * 179.72969 * 17 4 3 19 19 N 4.93632 * 133.65464 * 0.27527 * 3 1 2 20 20 C 1.36589 * 118.22273 * 359.42289 * 17 4 3 21 21 N 1.35139 * 121.07245 * 0.59773 * 20 17 4 22 22 H 0.96994 * 118.49628 * 179.71434 * 21 20 17 23 23 H 1.09000 * 109.46847 * 90.00334 * 1 2 3 24 24 H 1.09003 * 109.47435 * 210.00302 * 1 2 3 25 25 H 1.09004 * 109.46759 * 330.00525 * 1 2 3 26 26 H 1.08004 * 120.67701 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.47488 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47074 * 300.00356 * 8 6 5 29 29 H 1.08998 * 109.47433 * 59.99987 * 8 6 5 30 30 H 0.97004 * 120.00111 * 179.97438 * 12 11 9 31 31 H 1.08000 * 119.46163 * 180.29082 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1632 1.1747 0.0000 4 6 3.6321 1.1609 0.0006 5 7 4.3273 2.2806 0.0001 6 6 5.7815 2.2400 0.1730 7 1 6.2135 1.5435 -0.5456 8 6 6.3618 3.6367 -0.0584 9 6 6.1086 1.7857 1.5721 10 1 5.3129 1.5502 2.2633 11 6 7.4236 1.6754 1.9714 12 7 7.7091 1.2841 3.1941 13 14 8.8001 2.0821 0.7756 14 1 9.1455 3.5218 0.8896 15 1 9.9939 1.2595 1.0969 16 1 8.3547 1.7881 -0.6102 17 6 4.3004 -0.1580 -0.0051 18 6 5.7289 -0.2582 -0.0108 19 7 6.8621 -0.3377 -0.0172 20 6 3.5188 -1.2782 0.0016 21 7 2.1705 -1.1879 0.0010 22 1 1.6518 -2.0075 0.0017 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.6210 2.1088 -0.0004 27 1 7.4437 3.6067 0.0706 28 1 6.1251 3.9654 -1.0704 29 1 5.9298 4.3333 0.6601 30 1 8.6343 1.2062 3.4748 31 1 3.9861 -2.2519 0.0023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425220579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:48 Heat of formation + Delta-G solvation = 103.986846 kcal Electronic energy + Delta-G solvation = -15850.725595 eV Core-core repulsion = 13326.978121 eV Total energy + Delta-G solvation = -2523.747474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.90353 -36.90236 -34.42931 -32.94858 -32.73423 -31.05227 -28.66915 -27.42624 -24.85316 -23.25418 -21.90924 -19.57770 -19.32946 -16.71560 -16.51739 -15.74023 -15.56823 -14.60366 -14.34733 -13.75518 -12.97114 -12.95714 -12.84198 -12.46254 -12.32807 -12.14492 -11.98513 -11.84491 -11.45454 -11.21031 -10.90716 -10.41779 -10.21337 -9.86336 -9.36989 -9.01186 -8.93102 -8.44149 -7.93920 -6.57386 -5.99204 -3.97083 1.56078 1.96890 3.16597 3.33264 3.52657 3.59001 3.86698 3.95934 4.55210 4.59289 4.67280 4.85630 5.08458 5.11940 5.36836 5.41045 5.49587 5.72135 5.79161 5.97509 6.31107 6.48641 6.55099 6.68334 6.76563 7.00774 7.22571 7.30426 7.47500 7.53689 7.80631 8.56148 8.80306 8.93789 9.11651 9.66886 11.12668 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.038270 B = 0.008754 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.476191 B = 3197.720314 C = 3463.563103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.104 3.896 3 C -0.152 4.152 4 C 0.218 3.782 5 N -0.517 5.517 6 C 0.148 3.852 7 H 0.031 0.969 8 C -0.129 4.129 9 C -0.520 4.520 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.289 1.289 15 H -0.299 1.299 16 H -0.263 1.263 17 C -0.125 4.125 18 C 0.285 3.715 19 N -0.422 5.422 20 C 0.161 3.839 21 N -0.610 5.610 22 H 0.410 0.590 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.143 0.857 27 H 0.038 0.962 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 -7.089 -7.767 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.001 4.001 3 C -0.178 4.178 4 C 0.034 3.966 5 N -0.228 5.228 6 C 0.038 3.962 7 H 0.048 0.952 8 C -0.187 4.187 9 C -0.558 4.558 10 H 0.091 0.909 11 C -0.115 4.115 12 N -0.531 5.531 13 Si 0.729 3.271 14 H -0.217 1.217 15 H -0.227 1.227 16 H -0.188 1.188 17 C -0.140 4.140 18 C -0.029 4.029 19 N -0.100 5.100 20 C 0.028 3.972 21 N -0.219 5.219 22 H 0.245 0.755 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.161 0.839 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.022 -6.118 -7.715 17.134 hybrid contribution 0.789 -0.662 -0.178 1.045 sum -13.233 -6.781 -7.893 16.834 Atomic orbital electron populations 1.20863 0.88891 1.03942 1.03211 1.19768 0.93741 0.85622 1.00951 1.21279 0.91370 0.96266 1.08884 1.20972 0.92078 0.87177 0.96422 1.72514 1.10448 1.25863 1.13998 1.20159 0.84804 0.93669 0.97591 0.95208 1.21897 0.98531 0.99352 0.98902 1.21047 0.93474 1.45816 0.95459 0.90860 1.24798 0.98451 0.93573 0.94681 1.69888 1.19044 1.46773 1.17411 0.86688 0.81433 0.76115 0.82883 1.21683 1.22705 1.18781 1.17175 0.86069 0.94598 1.16145 1.24165 0.91627 0.93281 0.93778 1.80941 1.11617 1.08072 1.09336 1.21228 0.82588 0.98849 0.94528 1.40392 1.04863 1.07981 1.68649 0.75530 0.90394 0.91336 0.89576 0.83910 0.94381 0.95260 0.92625 0.92787 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 36.01 0.36 -0.31 16 2 C 0.10 1.09 6.80 -82.02 -0.56 0.54 16 3 C -0.15 -2.26 9.84 -37.38 -0.37 -2.63 16 4 C 0.22 4.45 6.69 -80.44 -0.54 3.91 16 5 N -0.52 -12.60 10.35 -50.24 -0.52 -13.12 16 6 C 0.15 4.01 1.84 -69.08 -0.13 3.89 16 7 H 0.03 0.86 3.92 -51.93 -0.20 0.66 16 8 C -0.13 -3.33 9.00 37.16 0.33 -3.00 16 9 C -0.52 -15.79 6.37 -34.44 -0.22 -16.01 16 10 H 0.07 2.44 8.03 -52.49 -0.42 2.02 16 11 C 0.09 2.75 4.73 -17.82 -0.08 2.67 16 12 N -0.89 -29.08 13.96 55.43 0.77 -28.30 16 13 Si 0.90 25.43 22.48 -169.99 -3.82 21.61 16 14 H -0.29 -7.91 6.86 56.52 0.39 -7.52 16 15 H -0.30 -8.49 7.11 56.52 0.40 -8.09 16 16 H -0.26 -7.38 6.43 56.52 0.36 -7.01 16 17 C -0.13 -2.40 5.72 -104.63 -0.60 -2.99 16 18 C 0.28 6.66 10.16 -22.47 -0.23 6.43 16 19 N -0.42 -11.00 13.91 41.84 0.58 -10.42 16 20 C 0.16 2.04 10.86 -16.69 -0.18 1.86 16 21 N -0.61 -5.66 5.19 -9.12 -0.05 -5.71 16 22 H 0.41 2.00 8.69 -40.82 -0.35 1.64 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 25 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 26 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 27 H 0.04 1.01 3.25 -51.93 -0.17 0.84 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.26 8.10 8.31 -40.82 -0.34 7.76 16 31 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 257.23 15.07 3.88 3.88 Total: -1.00 -39.10 257.23 -4.65 -43.75 By element: Atomic # 1 Polarization: -2.75 SS G_CDS: -3.29 Total: -6.04 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.21 Total: -5.65 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.79 Total: -57.55 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -3.82 Total: 21.61 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -39.10 -4.65 -43.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425220579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.736 kcal (2) G-P(sol) polarization free energy of solvation -39.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds