Wall clock time and date at job start Sun Mar 29 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38124 * 119.96429 * 2 1 4 4 C 1.38893 * 119.92585 * 179.72768 * 3 2 1 5 5 N 1.39676 * 120.07328 * 180.27174 * 4 3 2 6 6 C 1.46497 * 119.99636 * 180.29379 * 5 4 3 7 7 C 1.50704 * 109.47063 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99732 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00026 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00029 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99970 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47236 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47104 * 120.00268 * 11 9 7 14 14 H 1.48497 * 109.47211 * 239.99970 * 11 9 7 15 15 C 1.38932 * 119.84564 * 0.57058 * 4 3 2 16 16 C 1.38079 * 119.92869 * 359.70012 * 15 4 3 17 17 C 1.38262 * 119.96312 * 180.27421 * 2 1 3 18 18 C 1.50707 * 119.92360 * 0.02562 * 17 2 1 19 19 C 1.53002 * 117.49526 * 188.62406 * 18 17 2 20 20 C 1.52997 * 117.50093 * 120.00124 * 18 17 2 21 21 H 1.09002 * 109.47152 * 269.72523 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72623 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72604 * 1 2 3 24 24 H 1.08000 * 120.03468 * 0.02562 * 3 2 1 25 25 H 0.96992 * 120.00220 * 0.29474 * 5 4 3 26 26 H 1.08997 * 109.47436 * 300.00463 * 6 5 4 27 27 H 1.09007 * 109.47298 * 60.00347 * 6 5 4 28 28 H 0.97000 * 119.99986 * 180.02562 * 10 9 7 29 29 H 1.08007 * 120.03188 * 179.73088 * 15 4 3 30 30 H 1.07998 * 119.96534 * 179.97438 * 16 15 4 31 31 H 1.08998 * 115.54912 * 334.32520 * 18 17 2 32 32 H 1.08999 * 117.50011 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.49632 * 145.01974 * 19 18 17 34 34 H 1.08994 * 117.49633 * 214.97694 * 20 18 17 35 35 H 1.09001 * 117.49602 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5858 1.1957 0.0057 5 7 4.2865 2.4040 0.0115 6 6 5.7515 2.4010 0.0110 7 6 6.2567 3.8209 0.0185 8 1 5.5565 4.6431 0.0236 9 6 7.6127 4.0701 0.0199 10 7 8.4654 3.0688 0.0143 11 14 8.2389 5.8300 0.0285 12 1 7.0857 6.7657 0.0334 13 1 9.0641 6.0559 1.2422 14 1 9.0645 6.0676 -1.1827 15 6 4.2765 -0.0098 -0.0006 16 6 3.5806 -1.2024 -0.0062 17 6 2.1976 -1.1978 -0.0057 18 6 1.4415 -2.5015 -0.0126 19 6 2.2477 -3.7867 0.1848 20 6 1.6744 -3.4471 -1.1925 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5096 24 1 1.6569 2.1319 0.0004 25 1 3.8032 3.2449 0.0158 26 1 6.1141 1.8820 0.8982 27 1 6.1136 1.8909 -0.8817 28 1 9.4194 3.2442 0.0157 29 1 5.3565 -0.0140 -0.0005 30 1 4.1169 -2.1398 -0.0115 31 1 0.4388 -2.4656 0.4133 32 1 3.3250 -3.6894 0.3192 33 1 1.7755 -4.5967 0.7407 34 1 0.8251 -4.0337 -1.5426 35 1 2.3743 -3.1262 -1.9640 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573439552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:28 Heat of formation + Delta-G solvation = 18.797064 kcal Electronic energy + Delta-G solvation = -15235.224180 eV Core-core repulsion = 12811.322944 eV Total energy + Delta-G solvation = -2423.901237 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75074 -38.19713 -36.29689 -34.62896 -33.15437 -30.90578 -28.20121 -27.68032 -24.71079 -24.27236 -23.11453 -21.84144 -20.66635 -19.10494 -17.59538 -17.07522 -16.65937 -16.37018 -15.43523 -15.20525 -15.12845 -14.59411 -14.35637 -14.09461 -13.77314 -13.63543 -13.04513 -13.00178 -12.75491 -12.72621 -12.32637 -12.24423 -11.89118 -11.83184 -11.53062 -11.42772 -11.09027 -10.82433 -10.29386 -9.53673 -8.33447 -8.03354 -6.47855 0.58408 0.75662 1.39177 1.39711 1.53268 2.32224 2.82379 2.89895 3.01786 3.31069 3.82974 4.01941 4.10387 4.15910 4.27403 4.41428 4.52965 4.64776 4.78294 4.86946 4.93111 4.93843 4.97920 5.08763 5.17991 5.25699 5.25775 5.33438 5.37448 5.51641 5.59568 5.69441 5.84619 5.91572 6.17606 6.47278 6.73899 7.14908 7.27091 8.78889 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.004865 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.406096 B = 5753.778451 C = 6252.335712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.036 4.036 3 C -0.213 4.213 4 C 0.203 3.797 5 N -0.737 5.737 6 C 0.274 3.726 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.980 3.020 12 H -0.260 1.260 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.230 4.230 16 C -0.071 4.071 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.181 4.181 20 C -0.170 4.170 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.129 0.871 25 H 0.397 0.603 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.269 0.731 29 H 0.093 0.907 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 -9.457 -0.300 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.036 4.036 3 C -0.236 4.236 4 C 0.097 3.903 5 N -0.363 5.363 6 C 0.150 3.850 7 C -0.596 4.596 8 H 0.089 0.911 9 C -0.192 4.192 10 N -0.566 5.566 11 Si 0.804 3.196 12 H -0.184 1.184 13 H -0.201 1.201 14 H -0.201 1.201 15 C -0.253 4.253 16 C -0.090 4.090 17 C -0.134 4.134 18 C -0.126 4.126 19 C -0.218 4.218 20 C -0.207 4.207 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.231 0.769 26 H 0.006 0.994 27 H 0.005 0.995 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.105 -9.499 -0.305 17.846 hybrid contribution 1.109 1.166 0.010 1.609 sum -13.996 -8.333 -0.295 16.291 Atomic orbital electron populations 1.20846 0.88870 1.03639 1.03149 1.19737 0.97220 0.91096 0.95579 1.20599 0.90891 0.99150 1.12961 1.18318 0.92141 0.86723 0.93142 1.45118 1.06396 1.04862 1.79896 1.18525 0.76311 0.96583 0.93532 1.21620 0.92845 0.92384 1.52731 0.91079 1.25959 0.96705 1.02651 0.93841 1.70095 1.02977 1.33443 1.50134 0.85173 0.78432 0.78076 0.77938 1.18412 1.20128 1.20126 1.20674 0.98982 0.92519 1.13157 1.20855 0.94314 0.96536 0.97273 1.18924 0.92270 0.93996 1.08247 1.20915 0.99983 0.87388 1.04268 1.23126 0.99952 0.98530 1.00206 1.23057 1.03757 1.02552 0.91335 0.90041 0.89906 0.91006 0.85266 0.76914 0.99440 0.99454 0.92167 0.88843 0.85427 0.85549 0.89479 0.86848 0.86705 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.32 71.24 0.66 -1.48 16 2 C -0.04 -1.03 5.88 -19.88 -0.12 -1.15 16 3 C -0.21 -7.26 9.55 22.40 0.21 -7.05 16 4 C 0.20 8.45 6.65 38.21 0.25 8.70 16 5 N -0.74 -33.78 5.73 -343.12 -1.96 -35.75 16 6 C 0.27 15.09 4.67 85.63 0.40 15.49 16 7 C -0.56 -31.51 9.28 25.60 0.24 -31.27 16 8 H 0.07 3.79 7.60 -2.91 -0.02 3.77 16 9 C 0.01 0.46 5.46 84.65 0.46 0.92 16 10 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 11 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 15 C -0.23 -9.63 9.31 22.40 0.21 -9.42 16 16 C -0.07 -2.44 9.29 22.25 0.21 -2.23 16 17 C -0.13 -3.88 5.61 -19.84 -0.11 -3.99 16 18 C -0.11 -2.32 5.14 -11.54 -0.06 -2.38 16 19 C -0.18 -3.49 9.86 30.60 0.30 -3.19 16 20 C -0.17 -3.23 10.16 30.59 0.31 -2.92 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.08 1.37 6.64 -2.39 -0.02 1.36 16 23 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 24 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 25 H 0.40 16.62 8.33 -92.71 -0.77 15.84 16 26 H -0.01 -0.73 7.95 -2.39 -0.02 -0.75 16 27 H -0.01 -0.74 7.95 -2.38 -0.02 -0.76 16 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.09 4.36 6.74 -2.91 -0.02 4.34 16 30 H 0.13 3.84 6.01 -2.91 -0.02 3.83 16 31 H 0.13 2.22 6.89 -2.39 -0.02 2.21 16 32 H 0.09 1.85 6.17 -2.39 -0.01 1.84 16 33 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.36 291.34 3.63 -60.73 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.31 Total: 24.94 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 2.97 Total: -39.98 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -1.68 Total: -91.06 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.36 3.63 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573439552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.524 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds