Wall clock time and date at job start Sun Mar 29 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38150 * 119.89136 * 2 1 4 4 C 1.38213 * 119.93314 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.93480 * 0.02562 * 4 3 2 6 6 C 1.38445 * 120.21528 * 0.26411 * 5 4 3 7 7 C 1.38268 * 119.85000 * 359.45436 * 6 5 4 8 8 C 1.51367 * 109.75080 * 180.33648 * 7 6 5 9 9 C 1.54347 * 105.17781 * 17.44083 * 8 7 6 10 10 C 1.51378 * 130.39520 * 180.36682 * 6 5 4 11 11 H 1.09003 * 110.08038 * 281.20844 * 10 6 5 12 12 N 1.46890 * 110.53835 * 43.27438 * 10 6 5 13 13 C 1.46903 * 111.00421 * 270.97067 * 12 10 6 14 14 C 1.50694 * 109.47727 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99866 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00181 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99697 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00143 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47483 * 89.99829 * 18 16 14 20 20 H 1.48499 * 109.47499 * 210.00130 * 18 16 14 21 21 H 1.48506 * 109.47195 * 329.99908 * 18 16 14 22 22 H 1.08992 * 109.47431 * 89.99701 * 1 2 3 23 23 H 1.09002 * 109.46667 * 209.99702 * 1 2 3 24 24 H 1.09001 * 109.46780 * 329.99404 * 1 2 3 25 25 H 1.07995 * 120.03279 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.02986 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.88851 * 179.97438 * 5 4 3 28 28 H 1.09004 * 110.30152 * 136.36415 * 8 7 6 29 29 H 1.08998 * 110.30729 * 258.51157 * 8 7 6 30 30 H 1.08997 * 110.82259 * 91.87275 * 9 8 7 31 31 H 1.08998 * 110.82318 * 215.42730 * 9 8 7 32 32 H 1.00906 * 111.00096 * 34.92049 * 12 10 6 33 33 H 1.09005 * 109.46551 * 300.00027 * 13 12 10 34 34 H 1.09005 * 109.47061 * 59.99277 * 13 12 10 35 35 H 0.97004 * 119.99826 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1987 0.0005 5 6 4.2679 0.0021 0.0005 6 6 3.5797 -1.1992 -0.0055 7 6 2.1970 -1.2003 -0.0002 8 6 1.6866 -2.6253 -0.0002 9 6 2.8900 -3.4856 0.4405 10 6 4.0923 -2.6235 0.0005 11 1 4.4163 -2.9089 -1.0004 12 7 5.1998 -2.7686 0.9546 13 6 6.4892 -2.4805 0.3124 14 6 7.5987 -2.6386 1.3198 15 1 7.3690 -2.9250 2.3355 16 6 8.9071 -2.4187 0.9446 17 7 9.8753 -2.5573 1.8238 18 14 9.3044 -1.9241 -0.8123 19 1 9.2836 -0.4437 -0.9266 20 1 10.6523 -2.4298 -1.1762 21 1 8.2929 -2.5056 -1.7311 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6543 2.1323 -0.0004 26 1 4.1174 2.1341 0.0001 27 1 5.3479 0.0037 0.0005 28 1 0.8653 -2.7328 0.7084 29 1 1.3635 -2.9114 -1.0011 30 1 2.8898 -3.6274 1.5212 31 1 2.8909 -4.4447 -0.0774 32 1 5.0595 -2.1818 1.7634 33 1 6.6465 -3.1739 -0.5138 34 1 6.4859 -1.4584 -0.0667 35 1 10.7959 -2.4029 1.5597 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580434795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:10 Heat of formation + Delta-G solvation = 14.969317 kcal Electronic energy + Delta-G solvation = -15777.464156 eV Core-core repulsion = 13353.396935 eV Total energy + Delta-G solvation = -2424.067220 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.14412 -36.34205 -34.09593 -32.73177 -31.77353 -28.83099 -27.89998 -26.47164 -24.91317 -21.82016 -21.34271 -20.65894 -19.65151 -16.78786 -16.24035 -15.46177 -14.96765 -14.79712 -14.42102 -13.82988 -13.63405 -13.28609 -12.97935 -12.45517 -12.27682 -12.17184 -11.96460 -11.95344 -11.51205 -11.41301 -11.09554 -10.73470 -10.68005 -10.55927 -10.22701 -9.77003 -9.27903 -8.61990 -8.46928 -8.36976 -7.44271 -6.06222 -4.03944 1.54199 1.54802 3.27330 3.35362 3.38067 3.89711 4.41322 4.61490 4.73298 4.99756 5.08751 5.12190 5.25520 5.33173 5.34560 5.47963 5.53162 5.60513 5.75789 5.80164 5.83416 5.88183 6.01381 6.21392 6.24631 6.38835 6.45558 6.64241 6.70031 6.80496 6.92735 7.03234 7.21082 7.60609 7.89061 8.32252 8.64448 9.02204 9.55722 11.07168 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.034859 B = 0.006743 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.038218 B = 4151.335496 C = 4600.528291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.114 4.114 7 C -0.096 4.096 8 C -0.080 4.080 9 C -0.106 4.106 10 C 0.119 3.881 11 H 0.084 0.916 12 N -0.667 5.667 13 C 0.161 3.839 14 C -0.515 4.515 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.267 1.267 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.339 0.661 33 H 0.026 0.974 34 H -0.017 1.017 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.819 4.830 -5.432 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.097 4.097 8 C -0.117 4.117 9 C -0.144 4.144 10 C 0.008 3.992 11 H 0.102 0.898 12 N -0.295 5.295 13 C 0.034 3.966 14 C -0.554 4.554 15 H 0.097 0.903 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.191 1.191 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.044 0.956 34 H 0.000 1.000 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.532 4.128 -5.491 18.830 hybrid contribution 0.472 1.439 -1.023 1.828 sum -17.059 5.567 -6.513 19.090 Atomic orbital electron populations 1.20733 0.91726 1.02388 1.01867 1.19385 0.95536 0.92049 1.01335 1.20851 0.94226 0.96910 1.02437 1.21021 0.94174 0.97739 1.00797 1.20906 1.00585 0.91354 0.99637 1.21602 0.94551 0.96692 0.98731 1.20424 0.94213 0.94435 1.00595 1.21052 0.98570 0.90668 1.01451 1.22322 0.92133 0.97705 1.02242 1.21244 0.92400 0.88060 0.97466 0.89793 1.60664 1.01334 1.59541 1.07991 1.20113 0.87161 0.93554 0.95805 1.21062 0.89612 1.46555 0.98137 0.90303 1.24894 0.96251 0.95035 0.97068 1.69902 0.99918 1.49877 1.34202 0.86854 0.77953 0.79053 0.85847 1.20328 1.21117 1.19141 0.91602 0.91700 0.91954 0.86400 0.86162 0.85692 0.91084 0.90635 0.90282 0.90633 0.84340 0.95630 0.99954 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.87 36.01 0.36 -0.72 16 2 C -0.08 -1.09 5.88 -104.58 -0.62 -1.71 16 3 C -0.13 -1.65 9.69 -39.62 -0.38 -2.04 16 4 C -0.12 -1.73 10.05 -39.62 -0.40 -2.13 16 5 C -0.11 -1.82 9.75 -39.54 -0.39 -2.20 16 6 C -0.11 -1.91 5.51 -104.20 -0.57 -2.48 16 7 C -0.10 -1.39 6.00 -104.21 -0.63 -2.02 16 8 C -0.08 -0.98 6.27 -26.85 -0.17 -1.15 16 9 C -0.11 -1.49 6.77 -25.32 -0.17 -1.66 16 10 C 0.12 2.07 3.18 -67.83 -0.22 1.86 16 11 H 0.08 1.50 7.82 -51.93 -0.41 1.09 16 12 N -0.67 -13.97 6.26 -108.12 -0.68 -14.65 16 13 C 0.16 3.93 4.29 -4.98 -0.02 3.91 16 14 C -0.52 -14.82 9.87 -34.44 -0.34 -15.16 16 15 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.59 7.29 -51.93 -0.38 0.21 16 24 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 25 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 26 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.13 2.31 6.12 -52.49 -0.32 1.99 16 28 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.34 7.12 8.45 -39.29 -0.33 6.78 16 33 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 34 H -0.02 -0.41 5.41 -51.93 -0.28 -0.69 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -30.79 283.97 -8.96 -39.75 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.03 Total: 4.21 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.64 Total: -23.59 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.10 Total: -41.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.79 -8.96 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580434795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.718 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds