Wall clock time and date at job start Sun Mar 29 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 119.99992 * 2 1 4 4 C 1.38217 * 120.00043 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99839 * 359.74834 * 4 3 2 6 6 C 1.38211 * 119.99906 * 0.50381 * 5 4 3 7 7 C 1.50702 * 120.00145 * 179.76486 * 6 5 4 8 8 N 1.46902 * 109.47215 * 269.73164 * 7 6 5 9 9 C 1.47961 * 111.00005 * 169.99576 * 8 7 6 10 10 C 1.53934 * 86.17939 * 137.58072 * 9 8 7 11 11 C 1.50703 * 113.73399 * 221.81705 * 10 9 8 12 12 H 1.07999 * 119.99920 * 358.09577 * 11 10 9 13 13 C 1.37877 * 119.99669 * 178.10223 * 11 10 9 14 14 N 1.31510 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99624 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47263 * 89.99888 * 15 13 11 17 17 H 1.48497 * 109.47123 * 209.99934 * 15 13 11 18 18 H 1.48502 * 109.47383 * 330.00011 * 15 13 11 19 19 C 1.48296 * 111.00409 * 269.34877 * 8 7 6 20 20 C 1.38217 * 120.00160 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47399 * 270.02229 * 1 2 3 22 22 H 1.09003 * 109.47154 * 30.02568 * 1 2 3 23 23 H 1.09004 * 109.46968 * 150.02382 * 1 2 3 24 24 H 1.07994 * 119.99873 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.99929 * 180.02562 * 4 3 2 26 26 H 1.07994 * 119.99891 * 180.27605 * 5 4 3 27 27 H 1.09001 * 109.47251 * 149.72740 * 7 6 5 28 28 H 1.09004 * 109.46551 * 29.73106 * 7 6 5 29 29 H 1.09007 * 113.75652 * 23.26342 * 9 8 7 30 30 H 1.08993 * 113.76177 * 251.90248 * 9 8 7 31 31 H 1.09002 * 113.73279 * 90.64057 * 10 9 8 32 32 H 0.96995 * 120.00309 * 180.02562 * 14 13 11 33 33 H 1.09001 * 113.86054 * 108.14174 * 19 8 7 34 34 H 1.09000 * 113.76062 * 336.68481 * 19 8 7 35 35 H 1.08000 * 119.99748 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5807 -1.1969 0.0011 7 6 4.3341 -2.5020 0.0020 8 7 4.5795 -2.9269 -1.3827 9 6 5.5169 -4.0707 -1.4282 10 6 4.5802 -4.6632 -2.4964 11 6 4.3386 -6.1423 -2.3382 12 1 4.8319 -6.6885 -1.5479 13 6 3.4877 -6.7980 -3.2025 14 7 2.8874 -6.1330 -4.1653 15 14 3.1887 -8.6316 -3.0068 16 1 2.0343 -8.8508 -2.0988 17 1 2.8951 -9.2296 -4.3340 18 1 4.3990 -9.2720 -2.4321 19 6 3.4768 -3.7855 -1.8786 20 6 2.1981 -1.1970 0.0005 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6583 2.1326 -0.0004 25 1 4.1204 2.1327 0.0010 26 1 5.3516 0.0000 0.0113 27 1 3.7449 -3.2614 0.5161 28 1 5.2863 -2.3714 0.5162 29 1 5.5503 -4.6482 -0.5042 30 1 6.5063 -3.8129 -1.8058 31 1 4.8446 -4.3826 -3.5160 32 1 2.2885 -6.5943 -4.7730 33 1 2.8374 -3.3001 -2.6159 34 1 2.9147 -4.2798 -1.0862 35 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597191865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:50 Heat of formation + Delta-G solvation = 45.825125 kcal Electronic energy + Delta-G solvation = -15509.239656 eV Core-core repulsion = 13086.510444 eV Total energy + Delta-G solvation = -2422.729212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.45480 -38.23465 -33.35009 -32.45502 -31.53491 -28.46964 -26.77215 -25.49967 -24.89186 -22.71189 -21.68677 -20.04758 -18.54599 -16.64432 -16.20333 -15.28698 -14.88144 -14.81725 -14.24833 -13.93974 -13.54630 -13.52553 -12.87289 -12.58229 -12.12691 -12.03326 -11.74003 -11.64809 -11.32044 -11.02196 -10.85826 -10.76032 -10.53142 -10.24664 -9.71483 -9.28445 -9.01100 -8.54057 -8.46652 -8.28373 -7.86164 -6.04657 -4.09477 1.59444 1.63202 3.28306 3.35581 3.38502 3.96349 4.40592 4.91131 4.98472 5.06467 5.19000 5.25962 5.33975 5.47425 5.57574 5.64882 5.78985 5.85613 5.88659 5.96367 6.15734 6.30799 6.33052 6.38683 6.50207 6.65407 6.67671 6.78206 6.80010 6.92774 7.17296 7.23169 7.28921 7.73400 7.91601 8.09019 8.37212 8.93037 9.55436 11.04744 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.005734 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.100925 B = 4881.642430 C = 5366.500735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.054 4.054 7 C 0.056 3.944 8 N -0.485 5.485 9 C -0.003 4.003 10 C 0.038 3.962 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.016 3.984 20 C -0.110 4.110 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 11.391 8.686 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.130 4.130 6 C -0.054 4.054 7 C -0.073 4.073 8 N -0.208 5.208 9 C -0.131 4.131 10 C 0.019 3.981 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.112 4.112 20 C -0.129 4.129 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.575 11.976 8.204 14.602 hybrid contribution -0.483 -1.629 0.574 1.793 sum -2.059 10.347 8.778 13.725 Atomic orbital electron populations 1.20770 0.91534 1.02719 1.01922 1.19859 0.95838 0.93186 1.00077 1.20915 0.94271 0.97131 1.02672 1.21045 0.94243 0.97732 1.00852 1.20971 0.99684 0.91870 1.00508 1.19840 0.93425 0.95061 0.97108 1.21611 0.98588 0.93362 0.93716 1.68614 1.08839 1.27962 1.15390 1.24082 0.97238 0.91282 1.00504 1.20309 0.89470 0.94030 0.94246 1.21094 1.26996 0.93075 1.14517 0.92474 1.25011 0.95735 0.98054 0.94835 1.69967 1.29307 1.35965 1.17119 0.86631 0.78578 0.85565 0.77446 1.20690 1.21145 1.19833 1.24151 0.95095 0.93420 0.98580 1.20973 0.93803 0.97503 1.00603 0.91534 0.91825 0.91450 0.86686 0.86521 0.86393 0.93481 0.91213 0.92706 0.91596 0.92358 0.92884 0.91535 0.92839 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.00 0.36 -0.90 16 2 C -0.09 -1.25 5.88 -104.62 -0.62 -1.87 16 3 C -0.13 -1.71 9.70 -39.58 -0.38 -2.10 16 4 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 5 C -0.11 -1.66 9.70 -39.58 -0.38 -2.05 16 6 C -0.05 -0.89 5.44 -104.62 -0.57 -1.46 16 7 C 0.06 0.98 4.93 -4.97 -0.02 0.95 16 8 N -0.49 -10.08 6.15 -239.48 -1.47 -11.55 16 9 C 0.00 -0.05 7.50 -2.76 -0.02 -0.08 16 10 C 0.04 0.97 3.60 -90.84 -0.33 0.65 16 11 C -0.52 -14.15 8.77 -34.44 -0.30 -14.45 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 15 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.02 0.38 7.53 -2.57 -0.02 0.36 16 20 C -0.11 -1.76 9.36 -39.58 -0.37 -2.13 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 23 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 25 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.05 0.84 7.33 -51.93 -0.38 0.45 16 28 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 29 H 0.05 1.13 7.88 -51.92 -0.41 0.72 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.05 1.25 7.43 -51.93 -0.39 0.87 16 35 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -28.92 295.97 -9.81 -38.73 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.36 Total: 0.56 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.15 Total: -23.33 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.74 Total: -36.46 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.92 -9.81 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597191865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.555 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds