Wall clock time and date at job start Sun Mar 29 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99895 * 2 1 4 4 C 1.38241 * 120.00059 * 180.36621 * 3 2 1 5 5 C 1.38234 * 119.99640 * 359.83734 * 4 3 2 6 6 C 1.50702 * 119.99464 * 180.11158 * 5 4 3 7 7 N 1.46896 * 109.47078 * 270.02241 * 6 5 4 8 8 C 1.47481 * 111.00094 * 265.97304 * 7 6 5 9 9 C 1.53512 * 87.93194 * 221.30081 * 8 7 6 10 10 C 1.50701 * 114.17056 * 139.67279 * 9 8 7 11 11 H 1.08003 * 120.00110 * 266.15460 * 10 9 8 12 12 C 1.37882 * 119.99870 * 86.15949 * 10 9 8 13 13 N 1.31517 * 119.99623 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 120.00307 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47135 * 90.00039 * 14 12 10 16 16 H 1.48501 * 109.47549 * 210.00196 * 14 12 10 17 17 H 1.48504 * 109.47115 * 330.00279 * 14 12 10 18 18 C 1.47486 * 110.99971 * 170.00334 * 7 6 5 19 19 C 1.38234 * 120.00264 * 0.13873 * 5 4 3 20 20 C 1.38230 * 119.99880 * 359.95214 * 19 5 4 21 21 H 1.09000 * 109.47344 * 269.72897 * 1 2 3 22 22 H 1.09003 * 109.46871 * 29.72827 * 1 2 3 23 23 H 1.09001 * 109.47017 * 149.72165 * 1 2 3 24 24 H 1.08001 * 120.00279 * 0.27436 * 3 2 1 25 25 H 1.07997 * 119.99852 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.47577 * 30.02453 * 6 5 4 27 27 H 1.09003 * 109.46594 * 150.02122 * 6 5 4 28 28 H 1.09002 * 113.47586 * 336.06459 * 8 7 6 29 29 H 1.08996 * 113.47982 * 106.53144 * 8 7 6 30 30 H 1.09005 * 114.34547 * 272.36024 * 9 8 7 31 31 H 0.97003 * 120.00017 * 180.02562 * 13 12 10 32 32 H 1.08996 * 113.47924 * 253.47140 * 18 7 6 33 33 H 1.09002 * 113.47339 * 23.93616 * 18 7 6 34 34 H 1.08001 * 119.99769 * 179.97438 * 19 5 4 35 35 H 1.08000 * 120.00376 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 -0.0077 5 6 4.2717 0.0000 -0.0119 6 6 5.7787 0.0001 -0.0177 7 7 6.2630 0.0026 -1.4045 8 6 6.5286 -1.3701 -1.8740 9 6 7.7995 -0.8341 -2.5479 10 6 8.9933 -1.7459 -2.4272 11 1 9.6988 -1.6081 -1.6212 12 6 9.1850 -2.7560 -3.3460 13 7 10.2265 -3.5520 -3.2404 14 14 7.9645 -2.9948 -4.7398 15 1 8.3872 -2.1865 -5.9117 16 1 7.9200 -4.4300 -5.1184 17 1 6.6161 -2.5575 -4.2973 18 6 7.7174 0.2418 -1.4560 19 6 3.5805 -1.1971 -0.0114 20 6 2.1982 -1.1971 -0.0057 21 1 -0.3634 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5182 24 1 1.6582 2.1325 0.0045 25 1 4.1205 2.1325 -0.0081 26 1 6.1440 0.8892 0.4963 27 1 6.1440 -0.8907 0.4932 28 1 6.7293 -2.0740 -1.0663 29 1 5.7851 -1.7389 -2.5805 30 1 7.6469 -0.4565 -3.5590 31 1 10.3616 -4.2624 -3.8869 32 1 7.9813 1.2389 -1.8082 33 1 8.2353 -0.0321 -0.5368 34 1 4.1206 -2.1324 -0.0151 35 1 1.6582 -2.1324 -0.0048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:52 Heat of formation + Delta-G solvation = 50.980358 kcal Electronic energy + Delta-G solvation = -15462.663683 eV Core-core repulsion = 13040.158018 eV Total energy + Delta-G solvation = -2422.505664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67808 -38.60706 -33.69988 -32.43031 -30.78904 -29.95633 -27.24145 -25.02977 -24.76706 -22.54265 -22.10243 -20.39529 -18.64158 -17.06781 -15.98440 -15.43084 -15.11877 -15.02475 -14.35849 -13.87149 -13.67941 -13.40683 -13.28965 -12.78445 -12.53894 -12.27139 -11.84535 -11.79975 -11.54956 -11.12266 -10.87216 -10.82963 -10.30862 -9.96399 -9.89355 -9.59417 -9.13292 -8.77835 -8.57016 -8.34427 -8.12270 -6.11315 -4.11743 1.46811 1.55259 3.29758 3.38152 3.43905 3.85916 4.41983 4.82415 4.87259 4.93457 5.10877 5.13602 5.20406 5.27641 5.48904 5.54417 5.62694 5.72061 5.80985 5.81648 5.93802 6.12965 6.19949 6.21737 6.31659 6.43174 6.50935 6.55710 6.67737 6.75968 6.80049 7.03216 7.15855 7.35107 7.68080 7.85493 8.47984 8.91577 9.51870 11.01183 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.038579 B = 0.005743 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.614096 B = 4874.491757 C = 5257.629039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.064 4.064 6 C 0.054 3.946 7 N -0.478 5.478 8 C -0.009 4.009 9 C -0.001 4.001 10 C -0.512 4.512 11 H 0.074 0.926 12 C 0.074 3.926 13 N -0.899 5.899 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.257 1.257 18 C 0.008 3.992 19 C -0.108 4.108 20 C -0.122 4.122 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 6.800 6.724 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.120 4.120 5 C -0.065 4.065 6 C -0.074 4.074 7 N -0.200 5.200 8 C -0.138 4.138 9 C -0.020 4.020 10 C -0.549 4.549 11 H 0.092 0.908 12 C -0.128 4.128 13 N -0.537 5.537 14 Si 0.702 3.298 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.181 1.181 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.140 4.140 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.573 7.086 6.319 19.100 hybrid contribution -0.041 -0.809 -0.215 0.838 sum -16.614 6.277 6.104 18.780 Atomic orbital electron populations 1.20749 0.91608 1.02486 1.01909 1.19845 0.95747 0.93340 1.00957 1.20957 0.94185 0.97223 1.01838 1.20984 0.93829 0.97675 0.99500 1.19816 0.95475 0.93013 0.98187 1.21641 0.91136 1.01486 0.93132 1.68910 1.15563 1.19379 1.16184 1.24423 0.99732 0.89808 0.99797 1.20509 0.93604 0.93610 0.94274 1.20928 1.07671 1.13003 1.13339 0.90798 1.25006 0.94946 0.95397 0.97467 1.69913 1.28221 1.18837 1.36688 0.86880 0.82940 0.77239 0.82729 1.20258 1.21497 1.18125 1.23811 0.87743 1.00247 1.00252 1.21077 0.94065 0.97874 0.99596 1.20958 0.94133 0.97315 1.01571 0.91553 0.91813 0.91788 0.86497 0.86251 0.90888 0.93018 0.91773 0.91956 0.92582 0.92592 0.91497 0.92041 0.86266 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.10 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 4 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 5 C -0.06 -1.00 5.46 -104.62 -0.57 -1.57 16 6 C 0.05 0.89 4.94 -4.98 -0.02 0.87 16 7 N -0.48 -9.28 6.32 -246.09 -1.55 -10.83 16 8 C -0.01 -0.18 6.69 -7.54 -0.05 -0.24 16 9 C 0.00 -0.01 2.96 -91.24 -0.27 -0.28 16 10 C -0.51 -14.14 9.37 -34.44 -0.32 -14.47 16 11 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 14 Si 0.88 21.36 27.14 -169.99 -4.61 16.75 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.02 5.68 56.52 0.32 -5.70 16 18 C 0.01 0.16 7.25 -7.54 -0.05 0.11 16 19 C -0.11 -1.60 9.70 -39.59 -0.38 -1.98 16 20 C -0.12 -1.59 9.70 -39.59 -0.38 -1.98 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 23 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 24 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.07 1.09 8.02 -51.93 -0.42 0.68 16 27 H 0.05 0.86 7.25 -51.93 -0.38 0.48 16 28 H 0.06 1.39 7.37 -51.93 -0.38 1.01 16 29 H 0.06 1.36 7.11 -51.93 -0.37 1.00 16 30 H 0.06 1.35 7.04 -51.93 -0.37 0.98 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -29.84 289.86 -9.54 -39.39 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.33 Total: 0.44 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -3.18 Total: -23.72 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.78 Total: -37.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.61 Total: 16.75 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.84 -9.54 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.366 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds