Wall clock time and date at job start Sun Mar 29 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47302 * 2 1 4 4 C 1.36940 * 119.99529 * 269.50201 * 3 2 1 5 5 H 1.07998 * 120.00283 * 325.95955 * 4 3 2 6 6 C 1.38814 * 119.99812 * 145.96278 * 4 3 2 7 7 N 1.31622 * 119.99671 * 336.73305 * 6 4 3 8 8 Si 1.86797 * 120.00094 * 156.73577 * 6 4 3 9 9 H 1.48500 * 109.46839 * 59.99873 * 8 6 4 10 10 H 1.48504 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47241 * 300.00107 * 8 6 4 12 12 C 1.46493 * 120.00325 * 89.50042 * 3 2 1 13 13 C 1.50702 * 109.46954 * 89.99969 * 12 3 2 14 14 C 1.38505 * 119.54400 * 95.02363 * 13 12 3 15 15 C 1.38653 * 119.37868 * 179.97438 * 14 13 12 16 16 C 1.38533 * 118.50979 * 359.75151 * 15 14 13 17 17 C 1.39415 * 119.05011 * 0.48869 * 16 15 14 18 18 C 1.43206 * 119.73382 * 179.77406 * 17 16 15 19 19 N 6.09551 * 133.09196 * 111.59749 * 2 1 3 20 20 N 1.31562 * 119.54313 * 274.99979 * 13 12 3 21 21 H 1.09005 * 109.46956 * 59.99697 * 1 2 3 22 22 H 1.08997 * 109.47673 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46690 * 300.00450 * 1 2 3 24 24 H 1.09000 * 109.46690 * 239.99550 * 2 1 3 25 25 H 1.09002 * 109.46287 * 120.00006 * 2 1 3 26 26 H 0.97003 * 119.99587 * 180.02562 * 7 6 4 27 27 H 1.09006 * 109.47247 * 330.00444 * 12 3 2 28 28 H 1.08996 * 109.47674 * 209.99849 * 12 3 2 29 29 H 1.07999 * 120.31040 * 359.95798 * 14 13 12 30 30 H 1.08007 * 120.74408 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.47604 * 180.26532 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2564 2.0232 -1.1859 5 1 2.6232 1.4679 -2.0365 6 6 2.0261 3.3878 -1.2948 7 7 1.1831 3.9803 -0.4759 8 14 2.9126 4.3831 -2.6036 9 1 2.5677 3.8527 -3.9470 10 1 2.4953 5.8053 -2.5112 11 1 4.3792 4.2824 -2.3932 12 6 2.2522 2.0755 1.2686 13 6 3.6719 1.8399 1.7159 14 6 4.6494 2.7703 1.4043 15 6 5.9544 2.5504 1.8181 16 6 6.2348 1.4010 2.5387 17 6 5.2024 0.5049 2.8125 18 6 5.4767 -0.6902 3.5522 19 7 5.6943 -1.6385 4.1388 20 7 3.9655 0.7536 2.3975 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.0219 4.9338 -0.5522 27 1 1.5652 1.6936 2.0238 28 1 2.0864 3.1443 1.1338 29 1 4.3977 3.6586 0.8441 30 1 6.7341 3.2611 1.5869 31 1 7.2394 1.2001 2.8804 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602448908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:07 Heat of formation + Delta-G solvation = 70.080445 kcal Electronic energy + Delta-G solvation = -15556.002604 eV Core-core repulsion = 13030.784839 eV Total energy + Delta-G solvation = -2525.217766 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23313 -37.99160 -37.38678 -33.82574 -33.48309 -33.11321 -30.50971 -27.94880 -25.78877 -25.32613 -23.32048 -21.92507 -19.98360 -18.72352 -17.25558 -16.96094 -16.66338 -16.07374 -15.60721 -15.40485 -15.24516 -14.48534 -14.23052 -14.11072 -13.83538 -13.72140 -13.41561 -13.07833 -12.84983 -12.73099 -12.39918 -12.26099 -12.04900 -11.86877 -11.52656 -10.79469 -10.62790 -10.41394 -9.87631 -8.62079 -7.82620 -5.37878 -0.28485 0.36923 1.41585 1.52804 1.56077 1.62502 1.82974 2.53103 2.56872 2.95717 3.26274 3.74980 3.85980 4.05426 4.15018 4.21843 4.45966 4.56099 4.70402 4.86771 4.88115 4.93143 5.09272 5.17399 5.29637 5.37328 5.53445 5.63588 5.73501 5.77741 6.25454 6.47044 6.99234 7.16125 7.83450 8.39321 9.16681 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.024711 B = 0.009035 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.835040 B = 3098.355646 C = 3897.160547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.139 3.861 3 N -0.586 5.586 4 C -0.268 4.268 5 H 0.053 0.947 6 C -0.024 4.024 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.269 1.269 12 C 0.189 3.811 13 C 0.125 3.875 14 C -0.133 4.133 15 C -0.065 4.065 16 C -0.116 4.116 17 C 0.157 3.843 18 C 0.295 3.705 19 N -0.435 5.435 20 N -0.477 5.477 21 H 0.032 0.968 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.256 0.744 27 H 0.035 0.965 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.182 0.818 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 0.118 3.646 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 N -0.306 5.306 4 C -0.398 4.398 5 H 0.071 0.929 6 C -0.222 4.222 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.194 1.194 12 C 0.062 3.938 13 C -0.018 4.018 14 C -0.155 4.155 15 C -0.090 4.090 16 C -0.139 4.139 17 C 0.019 3.981 18 C -0.022 4.022 19 N -0.112 5.112 20 N -0.189 5.189 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.200 0.800 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.544 -1.799 4.728 9.930 hybrid contribution 0.366 1.405 -1.167 1.863 sum 8.911 -0.394 3.561 9.604 Atomic orbital electron populations 1.22097 0.98473 1.00042 1.00218 1.20969 0.92750 0.86084 0.98805 1.43928 1.74210 1.10965 1.01536 1.19189 1.37691 0.91903 0.91020 0.92895 1.25622 0.97605 0.99025 0.99942 1.70074 1.33355 1.10574 1.41348 0.85638 0.79596 0.77550 0.79489 1.21102 1.21661 1.19440 1.19894 0.86830 1.00990 0.86093 1.22586 1.00061 0.88280 0.90824 1.22385 0.94257 1.00393 0.98433 1.21951 0.96366 0.96869 0.93807 1.22213 1.00158 0.93332 0.98198 1.16619 0.91356 0.90738 0.99379 1.25220 0.92398 0.92074 0.92467 1.81192 1.09118 1.10551 1.10358 1.67357 1.20120 1.20855 1.10578 0.94873 0.91822 0.94649 0.94191 0.93514 0.93446 0.94647 0.88361 0.84889 0.80031 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 10.24 71.98 0.74 -5.21 16 2 C 0.14 5.97 6.39 86.38 0.55 6.52 16 3 N -0.59 -28.06 2.43 -706.34 -1.72 -29.78 16 4 C -0.27 -13.76 9.48 84.03 0.80 -12.96 16 5 H 0.05 2.77 7.93 -2.91 -0.02 2.75 16 6 C -0.02 -1.21 4.94 84.86 0.42 -0.79 16 7 N -0.91 -48.38 11.34 21.65 0.25 -48.13 16 8 Si 0.95 40.40 29.61 68.60 2.03 42.43 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.19 8.51 5.60 85.64 0.48 8.99 16 13 C 0.12 4.80 6.36 42.66 0.27 5.07 16 14 C -0.13 -4.30 9.72 22.43 0.22 -4.08 16 15 C -0.06 -1.47 10.17 22.44 0.23 -1.24 16 16 C -0.12 -2.57 9.80 22.62 0.22 -2.35 16 17 C 0.16 4.72 6.58 40.53 0.27 4.99 16 18 C 0.29 8.96 15.53 88.33 1.37 10.33 16 19 N -0.43 -14.15 18.54 19.01 0.35 -13.80 16 20 N -0.48 -17.64 10.19 -177.33 -1.81 -19.44 16 21 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 25 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 26 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16 27 H 0.04 1.60 8.07 -2.38 -0.02 1.58 16 28 H 0.10 4.83 5.23 -2.39 -0.01 4.82 16 29 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 30 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -59.14 282.49 5.79 -53.35 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.13 Total: 6.11 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 5.56 Total: 9.27 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -2.93 Total: -111.16 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -59.14 5.79 -53.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.428 kcal (2) G-P(sol) polarization free energy of solvation -59.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds