Wall clock time and date at job start Sun Mar 29 2020 22:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46511 * 109.47100 * 220.53830 * 3 2 1 5 5 C 1.36939 * 119.99694 * 274.01132 * 4 3 2 6 6 H 1.08000 * 120.00412 * 8.26883 * 5 4 3 7 7 C 1.38813 * 119.99675 * 188.27015 * 5 4 3 8 8 N 1.31620 * 119.99555 * 39.36137 * 7 5 4 9 9 Si 1.86796 * 120.00187 * 219.35685 * 7 5 4 10 10 H 1.48503 * 109.46904 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46852 * 120.00329 * 9 7 5 12 12 H 1.48492 * 109.47278 * 240.00350 * 9 7 5 13 13 C 1.46494 * 119.99786 * 94.00364 * 4 3 2 14 14 C 1.50707 * 109.46723 * 82.40790 * 13 4 3 15 15 N 1.32153 * 120.00201 * 84.53294 * 14 13 4 16 16 C 1.32119 * 119.99600 * 179.97438 * 15 14 13 17 17 C 1.38383 * 120.00616 * 0.02562 * 16 15 14 18 18 N 1.32132 * 119.99447 * 359.97438 * 17 16 15 19 19 C 1.32155 * 119.99639 * 359.73735 * 18 17 16 20 20 C 1.50703 * 119.99565 * 180.27792 * 19 18 17 21 21 H 4.40651 * 5.51325 * 180.02562 * 4 1 2 22 22 H 1.09005 * 109.47316 * 100.54097 * 3 2 1 23 23 H 1.08997 * 109.47580 * 340.53331 * 3 2 1 24 24 H 0.97001 * 119.99722 * 185.10393 * 8 7 5 25 25 H 1.08998 * 109.47807 * 322.40218 * 13 4 3 26 26 H 1.08998 * 109.46828 * 202.40109 * 13 4 3 27 27 H 1.08006 * 119.99424 * 180.02562 * 16 15 14 28 28 H 1.07999 * 120.00806 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46890 * 263.70496 * 20 19 18 30 30 H 1.08997 * 109.47206 * 23.70893 * 20 19 18 31 31 H 1.09003 * 109.47010 * 143.71244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.0506 0.8978 5 6 3.2833 2.3312 0.4362 6 1 2.9181 2.5978 -0.5446 7 6 3.9041 3.2867 1.2290 8 7 4.9545 2.9603 1.9519 9 14 3.2491 5.0355 1.2697 10 1 2.0686 5.1429 0.3753 11 1 2.8513 5.3828 2.6577 12 1 4.3064 5.9710 0.8091 13 6 3.4616 0.7305 2.2893 14 6 4.8509 0.1504 2.3573 15 7 5.8996 0.9522 2.4183 16 6 7.1174 0.4434 2.4785 17 6 7.2949 -0.9290 2.4770 18 7 6.2463 -1.7306 2.4160 19 6 5.0279 -1.2217 2.3616 20 6 3.8316 -2.1361 2.2983 21 1 -1.0502 -0.0005 -0.0001 22 1 3.0092 0.1888 -1.0104 23 1 3.0098 -0.9680 0.3425 24 1 5.3433 3.6066 2.5618 25 1 2.7453 0.0044 2.6736 26 1 3.4172 1.6383 2.8910 27 1 7.9745 1.0987 2.5287 28 1 8.2904 -1.3449 2.5266 29 1 3.5235 -2.2598 1.2602 30 1 4.0941 -3.1073 2.7178 31 1 3.0121 -1.7023 2.8713 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878553366.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:59 Heat of formation + Delta-G solvation = 160.053279 kcal Electronic energy + Delta-G solvation = -16054.047053 eV Core-core repulsion = 13532.730802 eV Total energy + Delta-G solvation = -2521.316251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.21019 -36.28448 -33.58573 -32.75920 -32.23389 -30.59178 -27.87570 -26.57986 -25.89297 -22.89572 -22.01811 -20.85497 -17.63569 -16.91876 -16.74622 -15.51753 -15.00839 -14.69484 -14.33554 -13.69648 -13.52819 -13.34661 -12.73992 -12.50527 -12.21162 -11.82697 -11.52494 -11.21620 -10.91913 -10.57331 -10.29725 -10.19214 -9.98583 -9.90109 -9.50824 -9.35253 -8.50136 -8.24825 -7.82605 -7.10437 -5.61923 -3.03876 1.63132 2.16329 3.42221 3.50811 3.56288 3.57481 3.62675 4.54984 4.69517 4.76524 5.09906 5.21200 5.31942 5.33437 5.52850 5.60407 5.80188 5.85972 5.91822 6.21795 6.23870 6.28167 6.42271 6.52327 6.59782 6.76088 7.10216 7.30818 7.86477 8.18419 8.22050 8.37573 8.97697 9.11661 9.78474 10.21027 11.19596 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.012722 C = 0.008191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.453760 B = 2200.390479 C = 3417.757368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.162 4.162 3 C 0.232 3.768 4 N -0.571 5.571 5 C -0.298 4.298 6 H 0.076 0.924 7 C 0.025 3.975 8 N -0.799 5.799 9 Si 0.847 3.153 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.294 1.294 13 C 0.208 3.792 14 C 0.090 3.910 15 N -0.307 5.307 16 C 0.020 3.980 17 C 0.016 3.984 18 N -0.458 5.458 19 C 0.051 3.949 20 C -0.098 4.098 21 H 0.204 0.796 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.252 0.748 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -7.646 1.699 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.165 4.165 3 C 0.106 3.894 4 N -0.290 5.290 5 C -0.424 4.424 6 H 0.093 0.907 7 C -0.179 4.179 8 N -0.437 5.437 9 Si 0.674 3.326 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.221 1.221 13 C 0.081 3.919 14 C -0.053 4.053 15 N -0.021 5.021 16 C -0.141 4.141 17 C -0.144 4.144 18 N -0.175 5.175 19 C -0.091 4.091 20 C -0.156 4.156 21 H 0.221 0.779 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.167 0.833 28 H 0.166 0.834 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.102 -7.496 1.755 7.700 hybrid contribution -0.232 1.119 -0.068 1.145 sum -0.130 -6.378 1.687 6.598 Atomic orbital electron populations 1.24692 0.95718 1.03727 1.03579 1.25175 0.96098 0.97450 0.97750 1.18065 0.82716 0.92864 0.95802 1.44027 1.73137 1.05914 1.05945 1.18968 1.36086 0.83943 1.03424 0.90663 1.24807 0.95550 0.96938 1.00584 1.70910 1.13636 1.33829 1.25300 0.87113 0.79681 0.88259 0.77547 1.20464 1.21569 1.22143 1.19715 0.86166 0.99021 0.87037 1.23427 0.99402 0.89209 0.93301 1.69759 0.96418 1.34673 1.01263 1.24144 0.98148 0.93657 0.98172 1.23479 0.97830 0.92724 1.00399 1.68089 0.98902 1.39698 1.10762 1.22080 0.93431 0.94232 0.99314 1.20760 0.94075 0.98091 1.02674 0.77918 0.91218 0.91154 0.93737 0.93774 0.89063 0.83314 0.83393 0.90576 0.91317 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.49 19.25 29.55 0.57 -3.92 16 2 C -0.16 -3.15 13.65 -37.12 -0.51 -3.66 16 3 C 0.23 4.68 6.16 -6.82 -0.04 4.64 16 4 N -0.57 -13.54 2.49 -177.94 -0.44 -13.98 16 5 C -0.30 -7.95 9.56 -15.06 -0.14 -8.09 16 6 H 0.08 2.06 8.05 -52.49 -0.42 1.64 16 7 C 0.02 0.66 4.43 -17.43 -0.08 0.58 16 8 N -0.80 -21.43 8.17 55.49 0.45 -20.98 16 9 Si 0.85 20.80 29.69 -169.99 -5.05 15.75 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 C 0.21 4.64 4.98 -5.19 -0.03 4.62 16 14 C 0.09 1.97 6.29 -82.41 -0.52 1.45 16 15 N -0.31 -7.05 6.85 -9.29 -0.06 -7.11 16 16 C 0.02 0.37 11.22 -17.37 -0.20 0.18 16 17 C 0.02 0.28 11.23 -17.37 -0.19 0.09 16 18 N -0.46 -8.68 10.42 -9.29 -0.10 -8.78 16 19 C 0.05 0.98 6.78 -82.41 -0.56 0.42 16 20 C -0.10 -1.51 8.89 36.01 0.32 -1.19 16 21 H 0.20 2.71 7.80 -54.08 -0.42 2.29 16 22 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 23 H 0.07 1.27 4.77 -51.93 -0.25 1.02 16 24 H 0.25 6.65 8.32 -40.82 -0.34 6.31 16 25 H 0.04 0.86 5.84 -51.93 -0.30 0.56 16 26 H 0.09 2.28 6.22 -51.93 -0.32 1.96 16 27 H 0.15 2.45 8.06 -52.48 -0.42 2.02 16 28 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.08 1.12 5.87 -51.93 -0.30 0.82 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.12 6.21 -51.93 -0.32 0.80 16 LS Contribution 266.80 15.07 4.02 4.02 Total: -1.00 -29.99 266.80 -5.72 -35.71 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.17 Total: 0.25 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.37 Total: -4.89 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.15 Total: -50.85 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.05 Total: 15.75 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.99 -5.72 -35.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878553366.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.765 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds