Wall clock time and date at job start Sun Mar 29 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 115.55815 * 2 1 4 4 C 1.53079 * 117.51047 * 145.70443 * 2 1 3 5 5 H 1.08996 * 117.53193 * 0.02562 * 4 2 1 6 6 C 1.53006 * 117.48813 * 214.96195 * 4 2 1 7 7 N 1.46905 * 109.46583 * 175.00829 * 6 4 2 8 8 C 1.46900 * 110.99343 * 180.02562 * 7 6 4 9 9 C 1.53009 * 109.46877 * 179.97438 * 8 7 6 10 10 C 1.52990 * 109.47327 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47128 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00221 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99722 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99557 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47434 * 60.00289 * 15 13 11 17 17 H 1.48500 * 109.46937 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47502 * 300.00004 * 15 13 11 19 19 C 1.52997 * 117.49402 * 214.30919 * 2 1 3 20 20 H 1.09002 * 117.49444 * 145.00139 * 19 2 1 21 21 Cl 1.80299 * 117.50400 * 0.02562 * 19 2 1 22 22 H 1.08999 * 109.47098 * 154.30276 * 1 2 3 23 23 H 1.09000 * 109.46733 * 274.30089 * 1 2 3 24 24 H 1.08993 * 109.46791 * 34.29948 * 1 2 3 25 25 H 1.08996 * 109.47234 * 295.00469 * 6 4 2 26 26 H 1.09002 * 109.47249 * 55.00878 * 6 4 2 27 27 H 1.00905 * 110.99502 * 303.95057 * 7 6 4 28 28 H 1.08994 * 109.47100 * 299.99666 * 8 7 6 29 29 H 1.09001 * 109.47567 * 60.00400 * 8 7 6 30 30 H 1.09006 * 109.46972 * 300.00179 * 9 8 7 31 31 H 1.09002 * 109.46746 * 59.99135 * 9 8 7 32 32 H 1.09006 * 109.47342 * 300.00076 * 10 9 8 33 33 H 1.08998 * 109.47147 * 59.99651 * 10 9 8 34 34 H 0.96998 * 119.99804 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1217 0.7650 5 1 1.6127 -1.8599 1.2680 6 6 3.5500 -0.7764 1.4710 7 7 4.0113 -1.9383 2.2425 8 6 5.2721 -1.6427 2.9360 9 6 5.7195 -2.8734 3.7274 10 6 7.0329 -2.5659 4.4492 11 6 7.4732 -3.7779 5.2292 12 1 6.8762 -4.6776 5.2115 13 6 8.6389 -3.7383 5.9646 14 7 9.3662 -2.6428 5.9857 15 14 9.1850 -5.2408 6.9307 16 1 9.3859 -6.3812 6.0010 17 1 10.4598 -4.9422 7.6314 18 1 8.1431 -5.5933 7.9285 19 6 2.2364 -1.1210 -0.7650 20 1 3.1713 -0.8751 -1.2686 21 17 1.2022 -2.3406 -1.5980 22 1 -0.3633 -0.9260 -0.4456 23 1 -0.3633 0.0771 1.0248 24 1 -0.3633 0.8489 -0.5791 25 1 4.3028 -0.5110 0.7288 26 1 3.3901 0.0663 2.1437 27 1 3.3037 -2.2439 2.8938 28 1 6.0370 -1.3831 2.2042 29 1 5.1237 -0.8063 3.6190 30 1 4.9543 -3.1327 4.4592 31 1 5.8676 -3.7102 3.0448 32 1 7.7979 -2.3069 3.7171 33 1 6.8851 -1.7290 5.1317 34 1 10.1860 -2.6149 6.5033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892930629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:13 Heat of formation + Delta-G solvation = -9.521931 kcal Electronic energy + Delta-G solvation = -13463.286521 eV Core-core repulsion = 11035.724431 eV Total energy + Delta-G solvation = -2427.562090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.109 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.70050 -36.23857 -35.43963 -33.38654 -31.29187 -29.08282 -26.84131 -24.57189 -22.20056 -21.33105 -20.75503 -19.93257 -16.35693 -15.99295 -15.62061 -15.10350 -14.50181 -14.08659 -13.81413 -13.39149 -13.08597 -12.83100 -12.24604 -12.21093 -11.80708 -11.60792 -11.46518 -11.41230 -10.94321 -10.81847 -10.57248 -10.53606 -10.04558 -9.89057 -9.66665 -9.31609 -9.05367 -8.32827 -8.20130 -5.98156 -4.00248 1.96881 3.24184 3.35192 3.39110 3.42087 4.05582 4.28565 4.47879 4.57560 4.77315 4.97994 5.14493 5.29306 5.37604 5.40413 5.49186 5.52548 5.66409 5.78197 5.86298 5.91281 6.04666 6.30898 6.71448 6.75487 7.14269 7.30065 7.58261 7.69682 7.84623 8.02201 8.45526 9.06792 9.63651 11.13329 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.056305 B = 0.003465 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.171280 B = 8078.583516 C = 8334.833855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 H 0.116 0.884 4 C -0.127 4.127 5 H 0.118 0.882 6 C 0.086 3.914 7 N -0.689 5.689 8 C 0.059 3.941 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.068 4.068 20 H 0.137 0.863 21 Cl -0.145 7.145 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.339 0.661 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.407 6.307 -12.367 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 H 0.134 0.866 4 C -0.146 4.146 5 H 0.136 0.864 6 C -0.043 4.043 7 N -0.320 5.320 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.112 4.112 20 H 0.155 0.845 21 Cl -0.118 7.118 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.056 0.944 27 H 0.156 0.844 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.002 5.992 -12.900 21.410 hybrid contribution 0.115 -0.248 1.188 1.219 sum -15.887 5.743 -11.712 20.557 Atomic orbital electron populations 1.21473 0.91904 1.03185 1.02350 1.22925 0.96499 0.94632 1.02100 0.86624 1.22945 0.99155 1.00752 0.91706 0.86368 1.21538 0.93553 0.92349 0.96909 1.60547 1.06766 1.33796 1.30877 1.22139 0.90207 0.98477 0.96120 1.21628 0.99606 0.95625 0.97671 1.19062 0.90739 0.96870 0.94882 1.21229 1.07062 0.98972 1.28545 0.92694 1.25032 0.96638 0.96044 0.96811 1.69955 1.15041 1.26987 1.41689 0.86647 0.77843 0.83270 0.80179 1.20194 1.21320 1.20261 1.25316 0.97474 0.94650 0.93741 0.84516 1.98684 1.71663 1.60548 1.80916 0.91179 0.91769 0.91906 0.90790 0.94437 0.84367 0.91458 0.95702 0.93616 0.92495 0.96579 0.96821 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 10.08 37.16 0.37 -0.62 16 2 C -0.14 -1.16 6.13 -90.58 -0.56 -1.72 16 3 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.24 5.52 -90.58 -0.50 -1.74 16 5 H 0.12 1.23 8.13 -51.93 -0.42 0.80 16 6 C 0.09 0.98 5.97 -3.82 -0.02 0.96 16 7 N -0.69 -9.83 6.50 -113.77 -0.74 -10.57 16 8 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 9 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.07 -0.65 6.66 -26.73 -0.18 -0.82 16 20 H 0.14 1.19 8.03 -51.93 -0.42 0.78 16 21 Cl -0.15 -1.54 27.40 -51.86 -1.42 -2.96 16 22 H 0.07 0.58 6.12 -51.93 -0.32 0.26 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.34 4.52 8.72 -39.29 -0.34 4.17 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -30.07 299.39 -9.21 -39.28 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.68 Total: -1.95 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -1.60 Total: -18.66 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.00 Total: -37.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.42 Total: -2.96 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.07 -9.21 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892930629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.754 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds