Wall clock time and date at job start Sun Mar 29 2020 21:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99699 * 2 1 4 4 C 1.53002 * 109.47114 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47130 * 64.99729 * 4 3 2 6 6 C 1.37096 * 119.99961 * 90.00374 * 5 4 3 7 7 H 1.07999 * 120.00016 * 222.17393 * 6 5 4 8 8 C 1.38951 * 120.00130 * 42.17193 * 6 5 4 9 9 N 1.31414 * 119.99630 * 6.29761 * 8 6 5 10 10 Si 1.86802 * 120.00074 * 186.30163 * 8 6 5 11 11 H 1.48500 * 109.46954 * 269.99729 * 10 8 6 12 12 H 1.48494 * 109.47237 * 29.99506 * 10 8 6 13 13 H 1.48505 * 109.46893 * 149.99863 * 10 8 6 14 14 C 1.34779 * 120.00422 * 270.00575 * 5 4 3 15 15 O 1.21292 * 119.99763 * 355.46830 * 14 5 4 16 16 C 1.50692 * 120.00245 * 175.47384 * 14 5 4 17 17 H 1.09004 * 115.55440 * 37.35338 * 16 14 5 18 18 C 1.53005 * 117.50067 * 251.68363 * 16 14 5 19 19 C 1.53003 * 117.50207 * 183.02085 * 16 14 5 20 20 H 1.08999 * 117.50528 * 214.98313 * 19 16 14 21 21 F 1.39900 * 117.49510 * 359.97438 * 19 16 14 22 22 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47435 * 299.99963 * 1 2 3 24 24 H 1.09008 * 109.47122 * 60.00195 * 1 2 3 25 25 H 1.09000 * 109.47031 * 59.99854 * 3 2 1 26 26 H 1.09001 * 109.47462 * 299.99639 * 3 2 1 27 27 H 1.09004 * 109.47075 * 305.00344 * 4 3 2 28 28 H 1.08996 * 109.47510 * 185.00239 * 4 3 2 29 29 H 0.96997 * 119.99599 * 175.00024 * 9 8 6 30 30 H 1.09001 * 117.49335 * 359.97438 * 18 16 14 31 31 H 1.08992 * 117.49977 * 145.02281 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.2683 1.3462 -2.3384 7 1 3.9420 1.0454 -3.3229 8 6 4.9836 2.5260 -2.1739 9 7 5.4871 2.8307 -0.9988 10 14 5.2296 3.6790 -3.6229 11 1 6.4777 3.3137 -4.3398 12 1 4.0748 3.5631 -4.5492 13 1 5.3318 5.0766 -3.1315 14 6 4.0959 -0.7759 -1.3331 15 8 3.9177 -1.4622 -0.3490 16 6 4.4506 -1.4215 -2.6477 17 1 5.1673 -0.8756 -3.2614 18 6 3.3511 -2.2018 -3.3712 19 6 4.5017 -2.9500 -2.6932 20 1 5.2516 -3.4097 -3.3369 21 9 4.2160 -3.6413 -1.5110 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8507 0.5686 0.8427 28 1 3.9784 2.1766 0.0902 29 1 6.0471 3.6165 -0.9002 30 1 2.3713 -2.2484 -2.8959 31 1 3.3447 -2.1695 -4.4606 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123803008.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:03 Heat of formation + Delta-G solvation = -94.319181 kcal Electronic energy + Delta-G solvation = -17019.295379 eV Core-core repulsion = 14023.886734 eV Total energy + Delta-G solvation = -2995.408644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.77632 -38.62866 -36.97065 -35.19217 -34.35563 -31.51980 -29.20558 -25.80409 -24.88509 -23.61753 -21.87585 -20.96822 -18.93970 -17.13632 -16.48719 -15.70428 -15.24658 -15.14685 -14.69071 -14.30759 -14.25168 -13.82009 -13.48814 -13.21613 -12.45749 -12.26705 -11.86477 -11.54004 -11.42666 -11.24103 -11.10779 -10.88966 -10.45428 -10.32969 -10.17564 -9.70889 -9.40232 -9.07251 -8.95735 -8.27359 -7.35943 -6.32031 -4.12787 3.09308 3.18505 3.20686 3.68772 4.08277 4.32738 4.56917 4.66444 4.89875 5.04357 5.36186 5.46140 5.64996 5.71360 5.75988 6.00576 6.02090 6.09737 6.19960 6.36842 6.46625 6.57793 6.68492 7.00463 7.28525 7.53940 7.93818 8.07158 8.45125 9.11043 9.60472 10.07389 10.68558 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.011630 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.066171 B = 2407.057830 C = 3260.885896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.049 3.951 4 C 0.111 3.889 5 N -0.441 5.441 6 C -0.326 4.326 7 H 0.086 0.914 8 C 0.039 3.961 9 N -0.876 5.876 10 Si 0.919 3.081 11 H -0.276 1.276 12 H -0.270 1.270 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.571 6.571 16 C -0.166 4.166 17 H 0.132 0.868 18 C -0.174 4.174 19 C 0.031 3.969 20 H 0.127 0.873 21 F -0.170 7.170 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.270 0.730 30 H 0.102 0.898 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -2.250 -4.289 6.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.029 4.029 4 C -0.013 4.013 5 N -0.161 5.161 6 C -0.454 4.454 7 H 0.103 0.897 8 C -0.165 4.165 9 N -0.514 5.514 10 Si 0.745 3.255 11 H -0.202 1.202 12 H -0.195 1.195 13 H -0.208 1.208 14 C 0.297 3.703 15 O -0.453 6.453 16 C -0.188 4.188 17 H 0.150 0.850 18 C -0.212 4.212 19 C -0.005 4.005 20 H 0.144 0.856 21 F -0.150 7.150 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.271 -2.553 -3.636 6.163 hybrid contribution -0.114 1.069 -0.757 1.315 sum -4.385 -1.485 -4.393 6.382 Atomic orbital electron populations 1.22617 0.83539 1.01560 0.98800 1.88157 1.17400 1.28298 1.95063 1.23166 0.96884 0.84146 0.98657 1.21708 0.88981 1.02826 0.87764 1.43144 1.58194 1.03354 1.11418 1.19463 1.34262 1.03615 0.88108 0.89669 1.25508 0.95124 0.98566 0.97283 1.69586 1.31618 1.27700 1.22516 0.86054 0.78902 0.79450 0.81063 1.20229 1.19460 1.20813 1.19263 0.79976 0.83365 0.87745 1.90603 1.54115 1.63074 1.37544 1.22853 1.03024 0.92886 1.00028 0.84975 1.23509 0.95406 1.02633 0.99683 1.21963 1.01588 0.90686 0.86286 0.85586 1.92846 1.94360 1.79648 1.48161 0.90662 0.95145 0.95041 0.94432 0.93607 0.92094 0.85116 0.91890 0.87974 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -8.29 9.68 -36.87 -0.36 -8.65 16 3 C 0.05 1.06 6.28 37.16 0.23 1.29 16 4 C 0.11 2.75 5.46 -4.04 -0.02 2.72 16 5 N -0.44 -11.38 2.50 -114.81 -0.29 -11.67 16 6 C -0.33 -8.18 8.31 -14.93 -0.12 -8.30 16 7 H 0.09 2.04 7.33 -52.49 -0.38 1.65 16 8 C 0.04 0.97 5.26 -17.47 -0.09 0.88 16 9 N -0.88 -22.77 10.92 55.50 0.61 -22.16 16 10 Si 0.92 19.00 29.56 -169.99 -5.03 13.98 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 C 0.51 13.08 6.98 -10.99 -0.08 13.00 16 15 O -0.57 -16.28 14.16 3.91 0.06 -16.22 16 16 C -0.17 -3.44 5.04 -91.77 -0.46 -3.91 16 17 H 0.13 2.57 7.50 -51.93 -0.39 2.19 16 18 C -0.17 -2.98 10.22 -26.69 -0.27 -3.25 16 19 C 0.03 0.57 7.83 -26.69 -0.21 0.36 16 20 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 21 F -0.17 -3.74 15.72 2.25 0.04 -3.71 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.60 7.36 -51.93 -0.38 1.22 16 28 H 0.13 3.35 5.27 -51.93 -0.27 3.07 16 29 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 30 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 31 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -31.14 271.17 -4.75 -35.88 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.95 Total: 4.02 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 0.09 Total: 4.44 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.32 Total: -33.83 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.30 Total: -24.87 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.14 -4.75 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123803008.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.438 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds