Wall clock time and date at job start Sun Mar 29 2020 21:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47526 * 269.99908 * 3 2 1 5 5 H 1.48493 * 109.47200 * 30.00584 * 3 2 1 6 6 H 1.48507 * 109.46851 * 150.00081 * 3 2 1 7 7 C 1.37877 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47000 * 180.02562 * 9 7 2 11 11 O 1.21282 * 120.00035 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99707 * 179.97438 * 10 9 7 13 13 C 1.46925 * 120.62854 * 179.97438 * 12 10 9 14 14 C 1.53187 * 108.77688 * 126.36839 * 13 12 10 15 15 C 1.53046 * 109.31043 * 54.63722 * 14 13 12 16 16 H 1.09002 * 109.46068 * 58.65418 * 15 14 13 17 17 O 1.42903 * 109.46192 * 178.62939 * 15 14 13 18 18 C 1.53043 * 109.53475 * 298.63386 * 15 14 13 19 19 H 1.08994 * 109.49744 * 301.41312 * 18 15 14 20 20 F 1.39907 * 109.49418 * 181.31707 * 18 15 14 21 21 C 1.46921 * 120.63351 * 359.97438 * 12 10 9 22 22 H 0.96996 * 119.99591 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47047 * 59.99530 * 9 7 2 24 24 H 1.09003 * 109.46574 * 299.99662 * 9 7 2 25 25 H 1.09003 * 109.59222 * 6.58108 * 13 12 10 26 26 H 1.09000 * 109.58691 * 246.15998 * 13 12 10 27 27 H 1.08996 * 109.50293 * 294.68191 * 14 13 12 28 28 H 1.09003 * 109.52666 * 174.59627 * 14 13 12 29 29 H 0.96692 * 114.00268 * 180.02562 * 17 15 14 30 30 H 1.09002 * 109.58756 * 353.41101 * 21 12 10 31 31 H 1.09001 * 109.59125 * 113.69997 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 8 3.4227 -3.4230 -0.0009 12 7 1.7810 -4.9153 -0.0018 13 6 2.7234 -6.0425 -0.0022 14 6 2.3798 -6.9728 1.1654 15 6 0.9086 -7.3835 1.0693 16 1 0.7322 -7.8817 0.1160 17 8 0.5929 -8.2768 2.1390 18 6 0.0226 -6.1393 1.1661 19 1 0.2165 -5.6271 2.1084 20 9 -1.3228 -6.5187 1.1083 21 6 0.3395 -5.1996 -0.0020 22 1 -0.4849 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5574 0.8881 25 1 3.7405 -5.6686 0.1156 26 1 2.6393 -6.5888 -0.9417 27 1 2.5515 -6.4527 2.1077 28 1 3.0092 -7.8616 1.1204 29 1 -0.3255 -8.5793 2.1407 30 1 -0.2164 -4.2695 0.1162 31 1 0.0608 -5.6750 -0.9424 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:44 Heat of formation + Delta-G solvation = -168.076583 kcal Electronic energy + Delta-G solvation = -16606.847946 eV Core-core repulsion = 13608.240941 eV Total energy + Delta-G solvation = -2998.607005 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.84799 -41.06031 -38.83440 -36.80048 -35.17622 -33.04098 -31.54455 -30.67745 -26.55403 -25.23991 -24.09903 -22.12104 -20.21419 -18.84314 -18.55092 -17.76429 -17.34915 -16.93958 -16.64126 -16.48998 -16.09958 -15.67290 -14.97896 -14.61342 -14.24432 -14.08668 -13.83899 -13.64473 -13.23686 -12.91982 -12.83711 -12.60152 -12.54232 -12.20563 -12.04344 -11.84870 -11.41392 -10.93662 -10.64546 -10.52850 -9.76031 -8.27322 -6.35113 1.40023 1.40584 1.53112 1.73793 1.95820 2.41786 3.03391 3.08368 3.21531 3.45376 3.53195 3.75895 3.98344 4.12815 4.22007 4.41394 4.53772 4.57629 4.74225 4.78864 4.89324 5.00121 5.12605 5.20068 5.51977 5.72701 5.98256 6.38706 6.68018 6.77692 7.28076 7.37923 8.84700 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.006549 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.268136 B = 4274.566975 C = 4761.860482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.011 3.989 10 C 0.522 3.478 11 O -0.576 6.576 12 N -0.619 5.619 13 C 0.107 3.893 14 C -0.118 4.118 15 C 0.094 3.906 16 H 0.092 0.908 17 O -0.571 6.571 18 C 0.051 3.949 19 H 0.083 0.917 20 F -0.206 7.206 21 C 0.087 3.913 22 H 0.268 0.732 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.397 0.603 30 H 0.091 0.909 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -15.982 0.588 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.029 4.029 10 C 0.313 3.687 11 O -0.455 6.455 12 N -0.354 5.354 13 C -0.015 4.015 14 C -0.157 4.157 15 C 0.034 3.966 16 H 0.110 0.890 17 O -0.379 6.379 18 C 0.014 3.986 19 H 0.101 0.899 20 F -0.187 7.187 21 C -0.037 4.037 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.610 -15.664 0.732 15.693 hybrid contribution -0.534 0.997 -0.028 1.131 sum -1.143 -14.667 0.704 14.728 Atomic orbital electron populations 1.70024 1.07133 1.28172 1.50986 1.25787 0.95850 1.02755 0.94369 0.85451 0.78462 0.78538 0.78635 1.19567 1.19899 1.19900 1.21385 0.93720 0.91246 1.51431 0.92614 1.19082 0.94265 0.90897 0.98610 1.21519 0.89838 0.84252 0.73082 1.90513 1.19020 1.84796 1.51160 1.48185 1.07003 1.05605 1.74591 1.21734 0.94213 0.86205 0.99299 1.21828 0.94542 1.00539 0.98753 1.22314 0.94401 0.87923 0.91935 0.88975 1.86474 1.35451 1.64754 1.51249 1.22689 0.77337 0.97808 1.00814 0.89894 1.92803 1.35556 1.92535 1.97807 1.22270 0.81128 1.01069 0.99222 0.92328 0.93890 0.94230 0.89884 0.88554 0.92176 0.86948 0.75309 0.89061 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.54 -31.76 8.92 25.60 0.23 -31.53 16 8 H 0.06 3.44 6.75 -2.91 -0.02 3.43 16 9 C 0.01 0.55 3.81 29.10 0.11 0.66 16 10 C 0.52 23.75 7.69 87.66 0.67 24.43 16 11 O -0.58 -30.06 14.87 -3.03 -0.05 -30.10 16 12 N -0.62 -20.57 2.97 -818.86 -2.43 -23.00 16 13 C 0.11 2.76 6.43 86.36 0.56 3.32 16 14 C -0.12 -2.53 5.73 30.67 0.18 -2.35 16 15 C 0.09 1.84 3.22 30.62 0.10 1.94 16 16 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 17 O -0.57 -11.20 13.32 -148.98 -1.98 -13.18 16 18 C 0.05 1.22 3.71 30.68 0.11 1.34 16 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 20 F -0.21 -4.90 16.67 44.97 0.75 -4.15 16 21 C 0.09 2.38 6.08 86.37 0.53 2.91 16 22 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 23 H 0.04 2.22 7.94 -2.39 -0.02 2.20 16 24 H 0.04 2.07 7.69 -2.39 -0.02 2.05 16 25 H 0.08 2.50 7.01 -2.39 -0.02 2.48 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.40 5.12 8.69 -74.06 -0.64 4.48 16 30 H 0.09 2.91 5.93 -2.39 -0.01 2.90 16 31 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.53 264.19 2.04 -67.49 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.50 Total: 7.46 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 2.94 Total: 1.81 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.15 Total: -76.49 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.03 Total: -43.29 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.75 Total: -4.15 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.53 2.04 -67.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.588 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds