Wall clock time and date at job start Sun Mar 29 2020 22:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31663 * 119.87036 * 2 1 4 4 C 1.32892 * 122.13875 * 179.97438 * 3 2 1 5 5 N 1.38887 * 119.35998 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99877 * 5.00336 * 5 4 3 7 7 C 1.36889 * 119.99697 * 184.99927 * 5 4 3 8 8 H 1.08002 * 120.00495 * 24.48318 * 7 5 4 9 9 C 1.38753 * 119.99770 * 204.48186 * 7 5 4 10 10 N 1.31607 * 120.00130 * 10.44123 * 9 7 5 11 11 Si 1.86803 * 120.00009 * 190.44702 * 9 7 5 12 12 H 1.48494 * 109.47368 * 59.99961 * 11 9 7 13 13 H 1.48499 * 109.47255 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47007 * 299.99711 * 11 9 7 15 15 C 1.38761 * 121.28158 * 0.02562 * 4 3 2 16 16 C 1.39035 * 118.82312 * 359.95694 * 15 4 3 17 17 N 1.37160 * 134.55165 * 180.02562 * 16 15 4 18 18 H 0.96993 * 125.06405 * 0.02562 * 17 16 15 19 19 C 1.37039 * 109.88294 * 180.02562 * 17 16 15 20 20 C 1.34296 * 109.96808 * 0.26384 * 19 17 16 21 21 C 1.39328 * 119.86234 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.46954 * 270.02641 * 1 2 3 23 23 H 1.09003 * 109.46600 * 30.02017 * 1 2 3 24 24 H 1.08991 * 109.47031 * 150.02500 * 1 2 3 25 25 H 1.08998 * 109.47138 * 93.42792 * 6 5 4 26 26 H 1.08998 * 109.46954 * 213.42747 * 6 5 4 27 27 H 1.09000 * 109.47125 * 333.42307 * 6 5 4 28 28 H 0.96998 * 120.00232 * 179.97438 * 10 9 7 29 29 H 1.08004 * 120.58820 * 180.02562 * 15 4 3 30 30 H 1.08005 * 125.01407 * 179.97438 * 19 17 16 31 31 H 1.08000 * 126.51000 * 179.69799 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1628 1.1417 0.0000 4 6 3.4907 1.1943 0.0005 5 7 4.1232 2.4308 0.0010 6 6 3.3315 3.6585 0.1116 7 6 5.4864 2.5023 -0.1018 8 1 6.0360 1.6966 -0.5657 9 6 6.1620 3.6099 0.3901 10 7 5.5275 4.4912 1.1335 11 14 7.9724 3.8502 -0.0030 12 1 8.1512 3.9450 -1.4740 13 1 8.4558 5.1007 0.6355 14 1 8.7491 2.6961 0.5168 15 6 4.2576 0.0379 0.0005 16 6 3.6128 -1.1939 0.0009 17 7 4.0326 -2.4997 0.0015 18 1 4.9590 -2.7872 0.0021 19 6 2.9484 -3.3378 0.0011 20 6 1.8136 -2.6197 -0.0055 21 6 2.2008 -1.2083 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3632 0.8899 -0.5142 24 1 -0.3633 -0.8901 -0.5134 25 1 3.2659 3.9554 1.1584 26 1 3.8100 4.4523 -0.4619 27 1 2.3296 3.4812 -0.2793 28 1 5.9999 5.2653 1.4776 29 1 5.3362 0.0937 0.0014 30 1 2.9991 -4.4167 0.0010 31 1 0.8065 -3.0096 -0.0120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:06 Heat of formation + Delta-G solvation = 63.731764 kcal Electronic energy + Delta-G solvation = -15672.045904 eV Core-core repulsion = 13146.552838 eV Total energy + Delta-G solvation = -2525.493065 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01289 -39.45059 -37.28414 -34.13951 -32.71481 -31.19677 -30.34638 -28.69362 -27.37454 -25.32367 -23.12877 -22.21870 -21.13958 -19.24940 -18.70517 -17.53063 -16.58001 -16.28533 -15.90574 -15.78075 -15.03867 -14.82638 -14.26538 -14.10784 -14.07817 -13.54454 -13.34103 -12.96860 -12.84242 -12.74564 -12.62147 -12.43916 -12.15818 -11.94284 -11.14501 -10.54596 -10.11895 -9.86063 -9.27154 -8.36962 -7.97832 -5.79698 0.45528 1.06045 1.38718 1.45742 1.50745 2.06483 2.21344 2.43607 2.92015 3.08681 3.41556 3.82899 4.24731 4.29538 4.57550 4.62919 4.82901 4.86912 4.92311 4.96712 5.01208 5.06271 5.22668 5.31672 5.35589 5.39105 5.45385 5.77827 6.06330 6.07146 6.39664 6.65498 6.94177 7.27646 7.40902 7.94898 8.71317 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.033992 B = 0.007823 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.530734 B = 3578.232501 C = 4326.444076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.210 3.790 3 N -0.587 5.587 4 C 0.364 3.636 5 N -0.459 5.459 6 C 0.153 3.847 7 C -0.326 4.326 8 H 0.091 0.909 9 C -0.017 4.017 10 N -0.907 5.907 11 Si 0.999 3.001 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.267 1.267 15 C -0.320 4.320 16 C 0.164 3.836 17 N -0.595 5.595 18 H 0.421 0.579 19 C 0.024 3.976 20 C -0.182 4.182 21 C -0.267 4.267 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.270 0.730 29 H 0.107 0.893 30 H 0.211 0.789 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -12.643 -2.233 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 N -0.307 5.307 4 C 0.130 3.870 5 N -0.152 5.152 6 C 0.009 3.991 7 C -0.454 4.454 8 H 0.109 0.891 9 C -0.218 4.218 10 N -0.544 5.544 11 Si 0.822 3.178 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.191 1.191 15 C -0.353 4.353 16 C 0.049 3.951 17 N -0.201 5.201 18 H 0.259 0.741 19 C -0.099 4.099 20 C -0.207 4.207 21 C -0.276 4.276 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.116 0.884 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.228 0.772 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.890 -11.385 -2.127 12.571 hybrid contribution 2.034 -0.086 0.072 2.037 sum -2.855 -11.470 -2.054 11.998 Atomic orbital electron populations 1.20677 0.86517 1.03806 1.03542 1.21124 0.97425 0.85807 0.89625 1.66938 1.07831 1.30475 1.25478 1.18244 0.87904 0.86340 0.94486 1.42423 1.05193 1.01491 1.66074 1.20982 0.92726 0.85705 0.99661 1.19739 0.81563 1.07069 1.37042 0.89109 1.26298 1.04585 0.96080 0.94867 1.70230 1.38751 1.13028 1.32414 0.84907 0.76318 0.77929 0.78691 1.19166 1.20226 1.19142 1.19656 0.99133 0.89327 1.27153 1.18049 0.94092 0.85606 0.97402 1.41706 1.09674 1.02758 1.65979 0.74078 1.22390 0.84742 0.97176 1.05625 1.21803 0.99441 0.88777 1.10714 1.19958 0.92536 0.95781 1.19358 0.89615 0.91222 0.88375 0.95180 0.93926 0.93125 0.92020 0.87504 0.77225 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 10.13 71.24 0.72 -1.79 16 2 C 0.21 8.47 6.83 42.85 0.29 8.76 16 3 N -0.59 -28.58 8.88 -180.59 -1.60 -30.18 16 4 C 0.36 19.33 7.34 132.87 0.97 20.30 16 5 N -0.46 -25.91 3.12 -541.40 -1.69 -27.60 16 6 C 0.15 8.22 8.77 127.77 1.12 9.34 16 7 C -0.33 -18.37 8.87 84.03 0.75 -17.62 16 8 H 0.09 4.97 6.33 -2.91 -0.02 4.95 16 9 C -0.02 -0.94 5.13 84.85 0.44 -0.51 16 10 N -0.91 -51.29 10.67 21.64 0.23 -51.06 16 11 Si 1.00 42.35 29.57 68.60 2.03 44.38 16 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 15 C -0.32 -15.64 9.28 22.59 0.21 -15.43 16 16 C 0.16 6.69 7.33 39.23 0.29 6.98 16 17 N -0.60 -17.59 6.06 -187.43 -1.14 -18.73 16 18 H 0.42 9.95 8.96 -92.71 -0.83 9.12 16 19 C 0.02 0.56 11.82 82.98 0.98 1.54 16 20 C -0.18 -4.95 10.81 23.48 0.25 -4.69 16 21 C -0.27 -10.14 6.15 -20.17 -0.12 -10.26 16 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.10 2.17 7.91 -2.39 -0.02 2.15 16 25 H 0.03 1.69 7.42 -2.39 -0.02 1.68 16 26 H 0.04 2.31 7.26 -2.39 -0.02 2.29 16 27 H 0.05 2.53 7.17 -2.39 -0.02 2.51 16 28 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.11 5.31 6.26 -2.91 -0.02 5.29 16 30 H 0.21 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -70.11 264.08 4.06 -66.05 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.33 Total: 20.53 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.90 Total: -3.39 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -4.20 Total: -127.57 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.11 4.06 -66.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.782 kcal (2) G-P(sol) polarization free energy of solvation -70.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds