Wall clock time and date at job start Sun Mar 29 2020 21:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08993 * 109.47532 * 342.37182 * 3 2 1 5 5 O 1.42896 * 109.47262 * 102.37634 * 3 2 1 6 6 C 1.42904 * 113.99803 * 269.99825 * 5 3 2 7 7 C 1.52999 * 109.47221 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47196 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00010 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00127 * 180.02562 * 8 7 6 11 11 N 1.31521 * 120.00058 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99983 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47189 * 89.99532 * 12 10 8 14 14 H 1.48503 * 109.47219 * 209.99709 * 12 10 8 15 15 H 1.48500 * 109.47371 * 329.99430 * 12 10 8 16 16 C 1.50706 * 109.46924 * 222.37138 * 3 2 1 17 17 C 1.38650 * 120.79111 * 99.99848 * 16 3 2 18 18 C 1.38193 * 119.16589 * 180.02562 * 17 16 3 19 19 N 1.31874 * 120.76375 * 0.02562 * 18 17 16 20 20 C 1.31868 * 121.72350 * 359.97438 * 19 18 17 21 21 C 1.38198 * 120.76515 * 0.02562 * 20 19 18 22 22 H 4.18742 * 15.03817 * 0.02562 * 4 2 1 23 23 H 1.08998 * 109.47032 * 299.99746 * 6 5 3 24 24 H 1.08995 * 109.47329 * 59.99960 * 6 5 3 25 25 H 1.08993 * 109.47526 * 300.00038 * 7 6 5 26 26 H 1.09003 * 109.47007 * 60.00204 * 7 6 5 27 27 H 0.96999 * 120.00053 * 180.02562 * 11 10 8 28 28 H 1.08005 * 120.41274 * 0.02562 * 17 16 3 29 29 H 1.07994 * 119.62195 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.61410 * 179.97438 * 20 19 18 31 31 H 1.08004 * 120.41627 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9785 0.3112 5 8 3.1222 0.2896 -1.3159 6 6 3.3165 -0.8680 -2.1309 7 6 3.8242 -0.4416 -3.5098 8 6 4.0297 -1.6625 -4.3691 9 1 3.8196 -2.6444 -3.9713 10 6 4.4868 -1.5260 -5.6627 11 7 4.7431 -0.3304 -6.1470 12 14 4.7408 -3.0393 -6.7280 13 1 3.4881 -3.3410 -7.4662 14 1 5.8371 -2.7844 -7.6967 15 1 5.0993 -4.1956 -5.8680 16 6 3.1478 1.0506 0.9576 17 6 3.5795 0.7038 2.2287 18 6 4.0326 1.6939 3.0796 19 7 4.0565 2.9551 2.6949 20 6 3.6538 3.3213 1.4938 21 6 3.1878 2.3866 0.5888 22 1 -1.0500 -0.0011 -0.0002 23 1 4.0487 -1.5245 -1.6609 24 1 2.3705 -1.3982 -2.2405 25 1 3.0918 0.2147 -3.9797 26 1 4.7701 0.0888 -3.4007 27 1 5.0643 -0.2344 -7.0571 28 1 3.5619 -0.3273 2.5497 29 1 4.3709 1.4320 4.0712 30 1 3.6877 4.3640 1.2144 31 1 2.8597 2.6928 -0.3936 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205649466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:54 Heat of formation + Delta-G solvation = 17.280642 kcal Electronic energy + Delta-G solvation = -14775.028059 eV Core-core repulsion = 12215.227970 eV Total energy + Delta-G solvation = -2559.800088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25201 -39.27592 -35.74639 -34.71702 -33.15396 -32.19465 -31.86526 -28.20453 -26.48888 -24.43309 -23.42903 -22.87672 -19.75896 -18.77389 -17.89962 -17.72315 -16.71092 -16.62959 -16.52996 -16.39081 -15.48130 -14.91196 -14.60599 -14.49224 -14.30830 -13.74973 -13.07403 -12.89388 -12.60493 -12.54563 -12.41011 -11.87167 -11.47221 -11.40591 -11.26904 -10.92505 -10.71627 -10.57937 -10.44419 -10.10546 -8.25124 -6.38607 0.12856 0.18994 1.40821 1.43133 1.53971 1.60419 1.74721 2.37443 2.75802 2.87762 3.09126 3.40048 3.57210 3.69876 3.91887 4.11963 4.18842 4.22707 4.38106 4.43451 4.65077 4.85738 4.87873 4.94236 4.96875 5.24817 5.36735 5.53575 5.69483 5.72318 6.06477 6.24568 6.54804 6.76900 6.97075 7.31484 8.87937 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.036253 B = 0.004936 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.157847 B = 5671.358584 C = 5990.260820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.253 4.253 3 C 0.231 3.769 4 H 0.108 0.892 5 O -0.388 6.388 6 C 0.084 3.916 7 C 0.030 3.970 8 C -0.546 4.546 9 H 0.069 0.931 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.974 3.026 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.259 1.259 16 C -0.050 4.050 17 C -0.158 4.158 18 C 0.094 3.906 19 N -0.504 5.504 20 C 0.091 3.909 21 C -0.157 4.157 22 H 0.256 0.744 23 H 0.056 0.944 24 H 0.045 0.955 25 H -0.007 1.007 26 H -0.004 1.004 27 H 0.266 0.734 28 H 0.165 0.835 29 H 0.192 0.808 30 H 0.177 0.823 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 0.557 16.857 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.253 4.253 3 C 0.174 3.826 4 H 0.125 0.875 5 O -0.308 6.308 6 C 0.008 3.992 7 C -0.007 4.007 8 C -0.584 4.584 9 H 0.087 0.913 10 C -0.197 4.197 11 N -0.571 5.571 12 Si 0.798 3.202 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.183 1.183 16 C -0.058 4.058 17 C -0.177 4.177 18 C -0.062 4.062 19 N -0.213 5.213 20 C -0.065 4.065 21 C -0.177 4.177 22 H 0.272 0.728 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.182 0.818 29 H 0.208 0.792 30 H 0.194 0.806 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.753 1.473 17.218 17.923 hybrid contribution -0.367 -1.174 -1.593 2.013 sum -5.120 0.299 15.625 16.445 Atomic orbital electron populations 1.25872 0.96708 0.98321 0.96430 1.23771 0.95330 1.02695 1.03538 1.17634 0.83825 0.97779 0.83383 0.87481 1.88023 1.85533 1.33751 1.23485 1.22633 0.98814 0.86471 0.91287 1.18918 0.94913 0.96477 0.90433 1.21455 1.45240 0.93466 0.98241 0.91297 1.26036 0.94612 0.99569 0.99477 1.70127 1.45764 1.24504 1.16749 0.85310 0.78054 0.78730 0.78122 1.19614 1.20669 1.18278 1.20099 0.96793 0.94221 0.94730 1.22284 0.99415 1.03148 0.92848 1.23285 0.94826 0.87286 1.00819 1.67725 1.15201 1.20711 1.17713 1.23063 0.93871 1.00941 0.88592 1.22104 1.00507 0.93688 1.01355 0.72756 0.92572 0.93715 0.98879 0.98543 0.92523 0.81754 0.79162 0.80601 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.25 -7.66 12.86 31.12 0.40 -7.26 16 3 C 0.23 7.23 2.81 28.04 0.08 7.31 16 4 H 0.11 2.88 7.69 -2.39 -0.02 2.86 16 5 O -0.39 -15.75 9.36 -148.98 -1.40 -17.14 16 6 C 0.08 3.63 5.67 71.98 0.41 4.04 16 7 C 0.03 1.64 5.34 29.85 0.16 1.80 16 8 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 9 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 12 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 16 C -0.05 -1.42 4.96 -19.67 -0.10 -1.51 16 17 C -0.16 -3.41 9.78 22.36 0.22 -3.20 16 18 C 0.09 1.96 11.18 84.68 0.95 2.91 16 19 N -0.50 -12.75 10.36 -195.86 -2.03 -14.78 16 20 C 0.09 2.31 11.18 84.68 0.95 3.26 16 21 C -0.16 -4.54 9.45 22.36 0.21 -4.33 16 22 H 0.26 3.85 7.80 -4.42 -0.03 3.81 16 23 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 28 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 30 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.13 3.96 7.86 -2.91 -0.02 3.93 16 Total: -1.00 -70.70 287.00 5.39 -65.32 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.10 Total: 7.62 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 5.40 Total: -29.79 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.74 Total: -71.69 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.40 Total: -17.14 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.70 5.39 -65.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205649466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.596 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds