Wall clock time and date at job start Sun Mar 29 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00018 * 2 1 4 4 H 1.07996 * 120.00173 * 202.34383 * 3 2 1 5 5 C 1.38812 * 119.99835 * 22.34670 * 3 2 1 6 6 N 1.31631 * 119.99988 * 11.34000 * 5 3 2 7 7 Si 1.86796 * 120.00242 * 191.34153 * 5 3 2 8 8 H 1.48499 * 109.47058 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47414 * 120.00058 * 7 5 3 10 10 H 1.48508 * 109.47187 * 239.99998 * 7 5 3 11 11 C 1.46499 * 120.00280 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47085 * 270.00004 * 11 2 1 13 13 C 1.36669 * 119.34096 * 94.99860 * 12 11 2 14 14 C 1.39796 * 118.69826 * 179.97438 * 13 12 11 15 15 C 1.45997 * 135.23968 * 180.02562 * 14 13 12 16 16 C 1.34465 * 106.97034 * 179.97438 * 15 14 13 17 17 N 1.36663 * 109.97750 * 359.97438 * 16 15 14 18 18 H 0.96996 * 125.05371 * 179.97438 * 17 16 15 19 19 C 1.37553 * 109.90279 * 0.02562 * 17 16 15 20 20 C 1.38820 * 134.47631 * 179.97438 * 19 17 16 21 21 N 1.31770 * 120.27941 * 180.02562 * 20 19 17 22 22 H 1.08998 * 109.46762 * 274.21722 * 1 2 3 23 23 H 1.08998 * 109.47082 * 34.22234 * 1 2 3 24 24 H 1.09003 * 109.46638 * 154.21773 * 1 2 3 25 25 H 0.96992 * 119.99794 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47032 * 150.00012 * 11 2 1 27 27 H 1.09001 * 109.47122 * 29.99731 * 11 2 1 28 28 H 1.08001 * 120.65536 * 359.72347 * 13 12 11 29 29 H 1.08001 * 126.51489 * 359.97438 * 15 14 13 30 30 H 1.08006 * 125.00898 * 179.97438 * 16 15 14 31 31 H 1.08004 * 119.86475 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3840 2.2690 1.0936 7 14 2.3366 4.0048 0.1689 8 1 3.6144 3.8168 -0.5640 9 1 1.4269 4.8617 -0.6331 10 1 2.6072 4.6571 1.4753 11 6 2.1976 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4200 13 6 1.5815 -2.5761 2.0164 14 6 1.8277 -2.9717 3.3345 15 6 1.1677 -3.8538 4.2925 16 6 1.8985 -3.8247 5.4209 17 7 2.9727 -2.9952 5.2602 18 1 3.6426 -2.8137 5.9377 19 6 2.9620 -2.4550 3.9952 20 6 3.7850 -1.5741 3.3068 21 7 3.5039 -1.2348 2.0650 22 1 -0.3633 0.0756 1.0249 23 1 -0.3633 0.8497 -0.5780 24 1 -0.3633 -0.9254 -0.4470 25 1 -0.0465 3.0775 1.4126 26 1 3.1500 -1.1381 -0.5143 27 1 1.6085 -2.0281 -0.5147 28 1 0.7206 -2.9490 1.4814 29 1 0.2642 -4.4217 4.1265 30 1 1.6702 -4.3756 6.3214 31 1 4.6595 -1.1651 3.7911 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231668708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:02 Heat of formation + Delta-G solvation = 97.361936 kcal Electronic energy + Delta-G solvation = -15612.940820 eV Core-core repulsion = 13088.906068 eV Total energy + Delta-G solvation = -2524.034752 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06132 -37.82145 -35.20987 -32.09565 -31.30940 -29.50879 -29.14605 -26.03702 -25.41371 -23.12643 -21.83282 -20.75279 -19.91921 -18.01195 -16.62672 -15.90837 -15.27874 -14.76496 -14.40648 -14.06869 -13.52236 -13.41426 -13.09497 -13.05572 -12.22895 -11.91949 -11.65735 -11.21338 -10.85447 -10.77841 -10.56842 -10.25153 -9.87685 -9.79697 -9.60593 -8.83489 -8.45081 -8.18370 -7.42990 -6.68535 -5.62718 -3.05722 1.48744 2.05778 2.97972 3.29769 3.45356 3.51789 3.55108 4.48006 4.66191 4.91357 5.02583 5.19516 5.40207 5.56261 5.65162 5.72065 5.84224 6.07243 6.21255 6.24725 6.39471 6.67101 6.80922 6.90549 6.95402 6.97353 7.44157 7.48336 7.65891 7.81722 7.94642 8.48705 8.86607 9.33754 9.94719 10.43006 11.42668 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.007270 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.458110 B = 3850.520990 C = 4073.092399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.587 5.587 3 C -0.236 4.236 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.194 3.806 12 C 0.095 3.905 13 C -0.127 4.127 14 C -0.074 4.074 15 C -0.212 4.212 16 C 0.053 3.947 17 N -0.590 5.590 18 H 0.413 0.587 19 C 0.019 3.981 20 C 0.107 3.893 21 N -0.440 5.440 22 H 0.027 0.973 23 H 0.048 0.952 24 H -0.002 1.002 25 H 0.250 0.750 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.124 0.876 29 H 0.144 0.856 30 H 0.168 0.832 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -12.280 7.091 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.366 4.366 4 H 0.091 0.909 5 C -0.200 4.200 6 N -0.556 5.556 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.066 3.934 12 C -0.039 4.039 13 C -0.149 4.149 14 C -0.085 4.085 15 C -0.238 4.238 16 C -0.075 4.075 17 N -0.194 5.194 18 H 0.249 0.751 19 C -0.090 4.090 20 C -0.062 4.062 21 N -0.149 5.149 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.162 0.838 30 H 0.185 0.815 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.449 -11.507 6.654 13.732 hybrid contribution -0.057 0.534 1.194 1.310 sum 3.392 -10.972 7.848 13.910 Atomic orbital electron populations 1.20843 0.82280 0.95719 0.99353 1.44187 1.01942 1.00427 1.84257 1.19326 0.98033 0.84689 1.34514 0.90902 1.25070 0.97803 0.98629 0.98536 1.70095 1.17932 1.26762 1.40788 0.86144 0.78699 0.84243 0.77288 1.20198 1.21768 1.21956 1.19912 0.96839 0.88635 0.88010 1.22205 0.89649 0.91366 1.00653 1.21003 1.00821 0.99845 0.93240 1.19395 0.95443 0.99084 0.94574 1.21589 1.02918 1.06080 0.93186 1.21804 0.89220 0.96673 0.99845 1.41589 1.24824 1.40793 1.12221 0.75100 1.19409 1.00447 1.02402 0.86712 1.21810 0.98308 0.95139 0.90960 1.67502 1.19467 1.20776 1.07132 0.95473 0.93338 0.98333 0.94002 0.92079 0.92727 0.85814 0.83797 0.81503 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.15 9.01 59.85 0.54 4.69 16 2 N -0.59 -15.45 2.91 -182.50 -0.53 -15.98 16 3 C -0.24 -6.77 9.67 -15.06 -0.15 -6.91 16 4 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 5 C 0.00 -0.08 5.13 -17.43 -0.09 -0.17 16 6 N -0.91 -27.64 10.59 55.49 0.59 -27.06 16 7 Si 0.91 22.87 29.57 -169.99 -5.03 17.84 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 11 C 0.19 4.30 6.00 -5.20 -0.03 4.27 16 12 C 0.10 2.08 6.33 -82.97 -0.53 1.56 16 13 C -0.13 -2.51 9.70 -39.57 -0.38 -2.90 16 14 C -0.07 -1.34 6.44 -105.13 -0.68 -2.02 16 15 C -0.21 -3.03 11.07 -37.81 -0.42 -3.45 16 16 C 0.05 0.62 11.82 -16.73 -0.20 0.42 16 17 N -0.59 -7.40 6.06 -10.64 -0.06 -7.47 16 18 H 0.41 3.65 8.96 -40.82 -0.37 3.29 16 19 C 0.02 0.32 7.33 -84.01 -0.62 -0.29 16 20 C 0.11 1.98 11.25 -17.36 -0.20 1.79 16 21 N -0.44 -9.75 10.23 -9.62 -0.10 -9.85 16 22 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 23 H 0.05 1.32 7.19 -51.93 -0.37 0.94 16 24 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 25 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 27 H 0.05 1.05 7.75 -51.93 -0.40 0.64 16 28 H 0.12 2.21 8.05 -52.49 -0.42 1.79 16 29 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.14 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -34.46 269.98 -7.39 -41.85 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.59 Total: -0.38 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.74 Total: -3.03 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.11 Total: -60.36 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.46 -7.39 -41.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231668708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.214 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds