Wall clock time and date at job start Sun Mar 29 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.46667 * 126.93585 * 326.84732 * 3 2 1 5 5 C 1.34523 * 106.36654 * 180.23800 * 4 3 2 6 6 N 1.36412 * 108.86282 * 359.78455 * 5 4 3 7 7 H 0.97001 * 124.87495 * 180.02562 * 6 5 4 8 8 C 1.34875 * 110.25961 * 359.97438 * 6 5 4 9 9 C 1.50706 * 125.81217 * 179.97438 * 8 6 5 10 10 N 1.46902 * 109.46577 * 260.02297 * 9 8 6 11 11 C 1.47481 * 111.00304 * 265.96699 * 10 9 8 12 12 C 1.53510 * 87.93343 * 221.30179 * 11 10 9 13 13 C 1.50700 * 114.33950 * 139.68842 * 12 11 10 14 14 H 1.08003 * 120.00006 * 266.06711 * 13 12 11 15 15 C 1.37872 * 120.00270 * 86.07627 * 13 12 11 16 16 N 1.31516 * 120.00188 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47367 * 89.99523 * 17 15 13 19 19 H 1.48504 * 109.47137 * 209.99938 * 17 15 13 20 20 H 1.48500 * 109.46829 * 329.99402 * 17 15 13 21 21 C 1.47479 * 110.99664 * 170.00012 * 10 9 8 22 22 H 1.07993 * 126.81453 * 0.04587 * 4 3 2 23 23 H 1.07992 * 125.56914 * 179.73840 * 5 4 3 24 24 H 1.09000 * 109.47318 * 20.01804 * 9 8 6 25 25 H 1.09000 * 109.47161 * 140.02435 * 9 8 6 26 26 H 1.08996 * 113.47284 * 336.06998 * 11 10 9 27 27 H 1.08997 * 113.47252 * 106.53050 * 11 10 9 28 28 H 1.08998 * 114.16604 * 272.37530 * 12 11 10 29 29 H 0.96997 * 119.99850 * 180.02562 * 16 15 13 30 30 H 1.09000 * 113.47874 * 253.46965 * 21 10 9 31 31 H 1.09005 * 113.47821 * 23.87729 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.4497 -0.9805 0.6411 5 6 4.7090 -0.5813 0.3871 6 7 4.6679 0.5594 -0.3599 7 1 5.4466 1.0452 -0.6738 8 6 3.3891 0.9143 -0.6004 9 6 2.9415 2.1173 -1.3901 10 7 2.5595 3.1944 -0.4671 11 6 1.1101 3.1685 -0.1954 12 6 1.1198 4.7001 -0.2978 13 6 -0.0679 5.2818 -1.0203 14 1 -0.0067 5.4923 -2.0778 15 6 -1.2326 5.5455 -0.3312 16 7 -1.3073 5.2889 0.9565 17 14 -2.7046 6.2672 -1.2266 18 1 -3.5550 5.1672 -1.7480 19 1 -3.4956 7.1014 -0.2866 20 1 -2.2333 7.1070 -2.3571 21 6 2.3441 4.4603 -1.1924 22 1 3.1479 -1.8490 1.2075 23 1 5.6060 -1.0816 0.7208 24 1 3.7574 2.4576 -2.0277 25 1 2.0852 1.8479 -2.0084 26 1 0.5298 2.6844 -0.9808 27 1 0.8616 2.8014 0.8004 28 1 1.3448 5.2086 0.6396 29 1 -2.1269 5.4741 1.4412 30 1 3.1413 5.1882 -1.0416 31 1 2.0940 4.3211 -2.2441 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233043447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:24 Heat of formation + Delta-G solvation = 85.430842 kcal Electronic energy + Delta-G solvation = -15397.591696 eV Core-core repulsion = 12873.039574 eV Total energy + Delta-G solvation = -2524.552123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13560 -40.50702 -37.37030 -34.87813 -32.77194 -32.00141 -29.52656 -27.23133 -26.56668 -24.43517 -23.02564 -21.55385 -20.54097 -19.03543 -18.30243 -17.32476 -16.86065 -16.39385 -15.93163 -15.38768 -15.15337 -14.73044 -14.21073 -14.10869 -14.03494 -13.85096 -13.67420 -13.38261 -13.19191 -12.89529 -12.72677 -12.37380 -11.98654 -11.71269 -11.25937 -10.92761 -10.54693 -9.84759 -9.69608 -9.11667 -8.19145 -6.30699 0.69065 1.38142 1.39480 1.49663 1.63503 1.81923 2.30472 2.38970 2.69328 3.10718 3.30308 3.45570 3.82256 3.93720 4.20974 4.42705 4.44913 4.52166 4.54865 4.70583 4.79175 4.93890 5.02735 5.12033 5.18646 5.38195 5.57827 5.76638 5.80774 6.01509 6.22885 6.27358 6.70670 6.75298 6.79788 7.38434 8.90813 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.038445 B = 0.006578 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.145208 B = 4255.672125 C = 4691.888522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.300 3.700 3 C -0.166 4.166 4 C -0.176 4.176 5 C 0.023 3.977 6 N -0.524 5.524 7 H 0.438 0.562 8 C 0.117 3.883 9 C 0.070 3.930 10 N -0.471 5.471 11 C 0.030 3.970 12 C 0.017 3.983 13 C -0.530 4.530 14 H 0.064 0.936 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.957 3.043 18 H -0.282 1.282 19 H -0.282 1.282 20 H -0.257 1.257 21 C 0.015 3.985 22 H 0.160 0.840 23 H 0.223 0.777 24 H 0.119 0.881 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.089 0.911 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.918 -9.896 -4.378 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.013 4.013 3 C -0.178 4.178 4 C -0.201 4.201 5 C -0.106 4.106 6 N -0.120 5.120 7 H 0.278 0.722 8 C -0.006 4.006 9 C -0.059 4.059 10 N -0.193 5.193 11 C -0.100 4.100 12 C -0.002 4.002 13 C -0.568 4.568 14 H 0.082 0.918 15 C -0.188 4.188 16 N -0.563 5.563 17 Si 0.782 3.218 18 H -0.208 1.208 19 H -0.208 1.208 20 H -0.181 1.181 21 C -0.113 4.113 22 H 0.178 0.822 23 H 0.240 0.760 24 H 0.137 0.863 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.732 -9.902 -3.735 18.960 hybrid contribution -1.319 0.444 -0.753 1.582 sum 14.413 -9.459 -4.488 17.814 Atomic orbital electron populations 1.81247 1.13708 1.10707 1.11840 1.25400 0.92514 0.91623 0.91715 1.16462 0.83444 1.04018 1.13861 1.22129 0.91172 1.01000 1.05771 1.22423 0.99777 0.89397 0.98973 1.41507 1.06241 1.22554 1.41708 0.72167 1.19820 0.84860 0.95446 1.00486 1.21341 1.01780 0.89252 0.93486 1.68817 1.16954 1.02382 1.31162 1.23682 0.87832 1.00889 0.97596 1.20085 0.93302 0.91551 0.95288 1.21403 0.97762 1.42161 0.95475 0.91801 1.25889 1.01862 0.95644 0.95445 1.70107 1.28079 1.48970 1.09137 0.85578 0.79094 0.78405 0.78770 1.20768 1.20766 1.18065 1.23848 0.98431 0.91880 0.97133 0.82203 0.76022 0.86295 0.93002 0.94473 0.95479 0.95053 0.92993 0.89302 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.55 18.54 19.00 0.35 -22.19 16 2 C 0.30 11.78 14.38 88.33 1.27 13.05 16 3 C -0.17 -5.04 6.13 -20.18 -0.12 -5.17 16 4 C -0.18 -3.72 11.10 23.62 0.26 -3.46 16 5 C 0.02 0.31 11.89 83.13 0.99 1.30 16 6 N -0.52 -8.26 5.91 -182.61 -1.08 -9.34 16 7 H 0.44 3.67 8.96 -92.71 -0.83 2.84 16 8 C 0.12 3.04 6.77 41.74 0.28 3.32 16 9 C 0.07 2.04 5.07 85.56 0.43 2.48 16 10 N -0.47 -17.93 6.32 -932.58 -5.89 -23.82 16 11 C 0.03 1.45 6.08 83.57 0.51 1.96 16 12 C 0.02 0.88 3.76 -11.20 -0.04 0.83 16 13 C -0.53 -29.74 8.83 25.60 0.23 -29.51 16 14 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 15 C 0.01 0.62 5.46 84.65 0.46 1.09 16 16 N -0.92 -57.25 13.26 21.45 0.28 -56.96 16 17 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 C 0.02 0.60 7.24 83.57 0.61 1.20 16 22 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 23 H 0.22 0.75 8.06 -2.91 -0.02 0.72 16 24 H 0.12 2.48 8.08 -2.39 -0.02 2.46 16 25 H 0.05 1.70 7.30 -2.39 -0.02 1.68 16 26 H 0.04 1.93 7.38 -2.39 -0.02 1.91 16 27 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.03 1.81 8.11 -2.39 -0.02 1.79 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.07 2.52 7.87 -2.38 -0.02 2.50 16 Total: -1.00 -75.25 277.81 0.88 -74.37 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 0.32 Total: 3.73 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.87 Total: -12.91 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -6.33 Total: -112.32 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.25 0.88 -74.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233043447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.798 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds