Wall clock time and date at job start Sun Mar 29 2020 22:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99872 * 2 1 4 4 H 1.08003 * 119.99556 * 202.08325 * 3 2 1 5 5 C 1.38804 * 120.00124 * 22.08519 * 3 2 1 6 6 N 1.31621 * 120.00114 * 11.26395 * 5 3 2 7 7 Si 1.86801 * 119.99873 * 191.25910 * 5 3 2 8 8 H 1.48502 * 109.47044 * 90.00317 * 7 5 3 9 9 H 1.48502 * 109.47261 * 210.00133 * 7 5 3 10 10 H 1.48500 * 109.47675 * 330.00183 * 7 5 3 11 11 C 1.46500 * 119.99962 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47333 * 269.99976 * 11 2 1 13 13 C 1.38547 * 126.21961 * 260.00517 * 12 11 2 14 14 N 1.31479 * 109.00858 * 179.97438 * 13 12 11 15 15 N 1.40038 * 108.91688 * 359.97438 * 14 13 12 16 16 C 1.36539 * 132.42903 * 180.02562 * 15 14 13 17 17 C 1.34934 * 120.65652 * 179.97438 * 16 15 14 18 18 C 1.40470 * 120.43280 * 0.02930 * 17 16 15 19 19 C 1.36071 * 119.59036 * 359.97438 * 18 17 16 20 20 C 1.37130 * 107.44653 * 0.02562 * 15 14 13 21 21 H 1.08996 * 109.47182 * 274.59520 * 1 2 3 22 22 H 1.09006 * 109.46910 * 34.59538 * 1 2 3 23 23 H 1.08998 * 109.46973 * 154.59299 * 1 2 3 24 24 H 0.97000 * 119.99813 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47239 * 149.99811 * 11 2 1 26 26 H 1.09008 * 109.46846 * 29.99929 * 11 2 1 27 27 H 1.08006 * 125.49183 * 359.97093 * 13 12 11 28 28 H 1.08002 * 119.67094 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.78456 * 179.74240 * 17 16 15 30 30 H 1.08003 * 120.20557 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.38445 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1703 1.2202 -0.3517 5 6 1.5320 2.3439 0.4520 6 7 0.3791 2.2716 1.0827 7 14 2.3373 4.0049 0.1651 8 1 1.8754 4.5615 -1.1319 9 1 1.9635 4.9324 1.2630 10 1 3.8129 3.8413 0.1361 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 3.6299 -1.5491 2.1272 14 7 3.4754 -2.0482 3.3338 15 7 2.1737 -2.5503 3.4541 16 6 1.5132 -3.1607 4.4814 17 6 0.2317 -3.5574 4.3362 18 6 -0.4446 -3.3486 3.1228 19 6 0.2005 -2.7416 2.0899 20 6 1.5375 -2.3340 2.2588 21 1 -0.3633 0.0823 1.0243 22 1 -0.3633 0.8460 -0.5835 23 1 -0.3633 -0.9283 -0.4409 24 1 -0.0527 3.0809 1.3982 25 1 3.1499 -1.1382 -0.5144 26 1 1.6083 -2.0282 -0.5148 27 1 4.5321 -1.0918 1.7484 28 1 2.0212 -3.3270 5.4199 29 1 -0.2760 -4.0426 5.1566 30 1 -1.4702 -3.6680 3.0104 31 1 -0.3072 -2.5744 1.1515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233237277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:04 Heat of formation + Delta-G solvation = 112.919815 kcal Electronic energy + Delta-G solvation = -15885.805752 eV Core-core repulsion = 13362.445641 eV Total energy + Delta-G solvation = -2523.360111 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.75725 -38.14976 -37.28764 -34.18095 -32.83836 -31.45960 -30.18622 -27.87723 -26.75973 -24.57307 -23.56698 -23.10533 -21.16586 -18.70016 -17.97891 -17.45346 -16.89132 -16.57518 -16.34558 -15.59590 -15.31625 -15.04087 -14.88868 -14.06770 -13.66910 -13.18942 -12.84674 -12.82580 -12.63611 -12.55228 -12.38112 -12.20267 -11.94953 -11.87499 -11.43250 -11.18329 -10.60555 -10.13548 -8.80234 -8.25366 -7.78042 -5.23419 -0.00082 0.29671 1.46105 1.46431 1.53085 1.55155 1.87548 2.52710 2.62389 3.35955 3.46289 3.87843 3.96508 4.00655 4.14460 4.27618 4.46191 4.67831 4.76690 4.87068 4.90090 5.05511 5.15596 5.26516 5.39119 5.49511 5.64381 5.66627 5.75392 5.81241 6.12087 6.37498 6.72273 7.20889 7.93998 8.37113 9.25280 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.008180 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.222795 B = 3422.193868 C = 3639.776830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.608 5.608 3 C -0.250 4.250 4 H 0.074 0.926 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.965 3.035 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.224 3.776 12 C -0.266 4.266 13 C 0.070 3.930 14 N -0.363 5.363 15 N -0.288 5.288 16 C 0.075 3.925 17 C -0.150 4.150 18 C -0.085 4.085 19 C -0.124 4.124 20 C 0.089 3.911 21 H -0.003 1.003 22 H 0.015 0.985 23 H 0.031 0.969 24 H 0.243 0.757 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.196 0.804 28 H 0.186 0.814 29 H 0.197 0.803 30 H 0.174 0.826 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 -13.313 4.083 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.330 5.330 3 C -0.381 4.381 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.794 3.206 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.097 3.903 12 C -0.279 4.279 13 C -0.105 4.105 14 N -0.189 5.189 15 N -0.056 5.056 16 C -0.049 4.049 17 C -0.171 4.171 18 C -0.107 4.107 19 C -0.143 4.143 20 C -0.031 4.031 21 H 0.016 0.984 22 H 0.034 0.966 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.213 0.787 28 H 0.203 0.797 29 H 0.214 0.786 30 H 0.192 0.808 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.921 -13.344 5.221 14.359 hybrid contribution 0.055 1.603 -0.631 1.724 sum -0.865 -11.741 4.590 12.636 Atomic orbital electron populations 1.20497 0.82749 0.95694 0.97124 1.44347 1.02126 1.01437 1.85107 1.19602 0.98084 0.86371 1.33996 0.90814 1.25760 0.98598 1.01709 0.99196 1.70254 1.19156 1.26892 1.42596 0.85289 0.78507 0.80163 0.76682 1.21057 1.22837 1.19319 1.19261 0.96208 0.86331 0.88495 1.21351 0.93440 1.10789 1.02364 1.23836 0.99819 0.96283 0.90529 1.77587 0.94485 1.25658 1.21149 1.46435 1.09983 1.38641 1.10545 1.22148 0.94264 0.96333 0.92128 1.21344 0.92229 1.03152 1.00405 1.21591 1.01703 0.95736 0.91715 1.20847 0.90761 1.00408 1.02318 1.19737 0.95097 1.01006 0.87241 0.98425 0.96630 0.95065 0.94752 0.92059 0.91920 0.78685 0.79741 0.78607 0.80818 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 8.78 127.77 1.12 10.33 16 2 N -0.61 -31.03 2.91 -731.31 -2.13 -33.16 16 3 C -0.25 -13.99 9.68 84.03 0.81 -13.18 16 4 H 0.07 3.97 7.84 -2.91 -0.02 3.94 16 5 C -0.06 -3.38 5.13 84.86 0.44 -2.94 16 6 N -0.94 -57.59 10.56 21.65 0.23 -57.36 16 7 Si 0.96 46.59 29.57 68.60 2.03 48.62 16 8 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 9 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 C 0.22 9.40 6.19 85.63 0.53 9.93 16 12 C -0.27 -11.24 5.77 -19.62 -0.11 -11.36 16 13 C 0.07 2.88 11.87 84.82 1.01 3.88 16 14 N -0.36 -14.97 12.66 -57.54 -0.73 -15.70 16 15 N -0.29 -10.79 3.90 -187.78 -0.73 -11.53 16 16 C 0.08 2.02 11.19 83.20 0.93 2.95 16 17 C -0.15 -3.04 9.98 22.05 0.22 -2.82 16 18 C -0.08 -1.95 10.07 22.31 0.22 -1.72 16 19 C -0.12 -3.96 10.09 22.39 0.23 -3.73 16 20 C 0.09 3.48 6.76 39.11 0.26 3.75 16 21 H 0.00 -0.14 7.40 -2.39 -0.02 -0.16 16 22 H 0.01 0.83 7.19 -2.38 -0.02 0.81 16 23 H 0.03 1.29 7.46 -2.39 -0.02 1.27 16 24 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.06 2.43 8.03 -2.39 -0.02 2.41 16 26 H 0.06 2.33 7.86 -2.38 -0.02 2.31 16 27 H 0.20 7.02 8.06 -2.91 -0.02 6.99 16 28 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.14 4.39 7.44 -2.91 -0.02 4.37 16 Total: -1.00 -73.93 270.20 5.45 -68.48 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.12 Total: 5.55 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 5.66 Total: -4.91 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -3.36 Total: -117.74 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -73.93 5.45 -68.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233237277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.400 kcal (2) G-P(sol) polarization free energy of solvation -73.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds