Wall clock time and date at job start Sun Mar 29 2020 21:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30661 * 1 3 3 Si 1.86798 * 119.99581 * 2 1 4 4 H 1.48502 * 109.46765 * 239.99759 * 3 2 1 5 5 H 1.48495 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.46916 * 120.00410 * 3 2 1 7 7 C 1.40160 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.40959 * 119.99981 * 0.02562 * 7 2 1 10 10 N 1.33700 * 119.10100 * 179.97438 * 9 7 2 11 11 C 1.31521 * 120.85202 * 180.02562 * 10 9 7 12 12 C 1.40692 * 119.06437 * 0.02562 * 11 10 9 13 13 C 1.47200 * 120.81395 * 180.02562 * 12 11 10 14 14 C 1.32142 * 118.70433 * 64.72831 * 13 12 11 15 15 C 1.50180 * 122.96698 * 180.61396 * 14 13 12 16 16 N 1.46829 * 110.24094 * 342.90291 * 15 14 13 17 17 C 1.47210 * 110.28582 * 51.28607 * 16 15 14 18 18 C 1.50346 * 118.70166 * 244.99747 * 13 12 11 19 19 C 1.40696 * 118.37232 * 0.26435 * 12 11 10 20 20 N 1.31525 * 119.05963 * 359.44685 * 19 12 11 21 21 H 0.96995 * 119.99887 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.46265 * 180.02562 * 11 10 9 23 23 H 1.08003 * 118.51849 * 0.58374 * 14 13 12 24 24 H 1.09008 * 109.33760 * 222.67031 * 15 14 13 25 25 H 1.08995 * 109.21908 * 103.06432 * 15 14 13 26 26 H 1.00898 * 110.99846 * 174.72939 * 16 15 14 27 27 H 1.09002 * 109.62578 * 170.79502 * 17 16 15 28 28 H 1.09000 * 109.78131 * 50.31915 * 17 16 15 29 29 H 1.08996 * 109.42971 * 283.24403 * 18 13 12 30 30 H 1.09001 * 109.43402 * 43.10013 * 18 13 12 31 31 H 1.07993 * 120.46928 * 179.70733 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0074 -1.2138 0.0005 8 1 3.0875 -1.2138 0.0010 9 6 1.3026 -2.4346 0.0005 10 7 1.9892 -3.5818 0.0005 11 6 1.3667 -4.7404 0.0000 12 6 -0.0400 -4.7604 -0.0011 13 6 -0.7760 -6.0352 -0.0011 14 6 -0.6656 -6.8318 1.0474 15 6 -1.3626 -8.1587 1.1427 16 7 -2.4458 -8.2356 0.1544 17 6 -1.9433 -7.8782 -1.1824 18 6 -1.6188 -6.3824 -1.1968 19 6 -0.7262 -3.5321 -0.0073 20 7 -0.0341 -2.4137 -0.0007 21 1 -0.4850 0.8400 0.0004 22 1 1.9276 -5.6633 0.0005 23 1 -0.0458 -6.5146 1.8731 24 1 -1.7780 -8.2772 2.1435 25 1 -0.6439 -8.9559 0.9534 26 1 -2.8662 -9.1528 0.1494 27 1 -2.7064 -8.0944 -1.9301 28 1 -1.0422 -8.4504 -1.4029 29 1 -2.5457 -5.8098 -1.1656 30 1 -1.0731 -6.1383 -2.1082 31 1 -1.8058 -3.5080 -0.0131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240467439.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:54 Heat of formation + Delta-G solvation = 35.277513 kcal Electronic energy + Delta-G solvation = -15286.349765 eV Core-core repulsion = 12759.622831 eV Total energy + Delta-G solvation = -2526.726934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89801 -39.19195 -35.86229 -34.25856 -33.73969 -31.62626 -31.09275 -28.13233 -24.98258 -24.79307 -23.78108 -22.82552 -19.83814 -18.52662 -17.94664 -17.81763 -16.94716 -16.23312 -15.62986 -15.46574 -14.89109 -14.88357 -14.50096 -14.17223 -13.93492 -13.21468 -13.11133 -13.07830 -12.89976 -12.68955 -12.24162 -11.98302 -11.80211 -11.32257 -11.14461 -10.82318 -10.12860 -9.58269 -9.38695 -9.04116 -8.45461 -6.75478 0.55580 1.03443 1.37754 1.39044 1.53696 1.55978 2.18602 2.71266 3.37193 3.83526 3.95739 3.97348 4.01895 4.10638 4.38366 4.38965 4.51011 4.51707 4.62720 4.74985 4.92294 4.99742 5.08051 5.16711 5.19726 5.39274 5.60091 5.82429 6.01433 6.10690 6.20744 6.48999 6.57589 6.63269 7.14904 8.17806 8.32509 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.065105 B = 0.005543 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.972291 B = 5050.180643 C = 5219.742022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.022 3.978 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.432 4.432 8 H 0.091 0.909 9 C 0.355 3.645 10 N -0.621 5.621 11 C 0.166 3.834 12 C -0.310 4.310 13 C -0.037 4.037 14 C -0.180 4.180 15 C 0.099 3.901 16 N -0.694 5.694 17 C 0.063 3.937 18 C -0.076 4.076 19 C 0.157 3.843 20 N -0.539 5.539 21 H 0.286 0.714 22 H 0.156 0.844 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.357 0.643 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -10.659 -0.743 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.119 3.881 10 N -0.341 5.341 11 C -0.006 4.006 12 C -0.319 4.319 13 C -0.039 4.039 14 C -0.199 4.199 15 C -0.030 4.030 16 N -0.327 5.327 17 C -0.066 4.066 18 C -0.113 4.113 19 C -0.017 4.017 20 N -0.256 5.256 21 H 0.097 0.903 22 H 0.173 0.827 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.176 0.824 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.016 -8.919 -0.601 9.800 hybrid contribution 0.425 -0.810 -0.123 0.923 sum -3.591 -9.729 -0.724 10.396 Atomic orbital electron populations 1.70185 1.09068 1.30041 1.27119 1.27146 0.95914 1.04793 0.92324 0.84971 0.78487 0.74176 0.80292 1.18090 1.18426 1.18139 1.19663 0.95072 0.89064 1.42872 0.89124 1.20323 0.86569 0.91768 0.89422 1.68625 1.41474 0.99229 1.24769 1.23225 0.91348 0.95736 0.90324 1.20250 0.94969 0.95041 1.21635 1.19479 0.96561 0.91717 0.96127 1.22714 1.02313 0.97334 0.97498 1.20710 0.91888 0.93358 0.97038 1.60628 1.31231 1.35058 1.05744 1.21960 0.99344 0.94194 0.91132 1.20493 0.98403 0.97083 0.95343 1.23451 0.99729 0.88198 0.90325 1.69279 1.08151 1.28494 1.19725 0.90267 0.82676 0.88767 0.88915 0.92986 0.82365 0.88585 0.94457 0.91017 0.91688 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.06 11.40 21.86 0.25 -39.81 16 2 C 0.02 1.15 5.50 85.33 0.47 1.62 16 3 Si 1.00 38.05 29.56 68.60 2.03 40.08 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.43 -24.71 9.35 23.40 0.22 -24.49 16 8 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 9 C 0.35 21.08 7.35 134.85 0.99 22.08 16 10 N -0.62 -34.48 10.33 -193.04 -1.99 -36.47 16 11 C 0.17 7.83 11.01 85.34 0.94 8.77 16 12 C -0.31 -13.83 5.22 -19.72 -0.10 -13.93 16 13 C -0.04 -1.31 5.36 -18.61 -0.10 -1.41 16 14 C -0.18 -5.63 9.55 24.53 0.23 -5.39 16 15 C 0.10 2.26 6.74 85.41 0.58 2.84 16 16 N -0.69 -14.94 6.90 -518.11 -3.58 -18.52 16 17 C 0.06 1.39 6.61 86.27 0.57 1.96 16 18 C -0.08 -2.24 6.01 29.76 0.18 -2.07 16 19 C 0.16 7.85 11.07 85.34 0.94 8.80 16 20 N -0.54 -31.29 7.82 -193.04 -1.51 -32.79 16 21 H 0.29 13.73 8.29 -92.71 -0.77 12.96 16 22 H 0.16 6.21 8.06 -2.91 -0.02 6.19 16 23 H 0.09 3.15 7.98 -2.91 -0.02 3.13 16 24 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.36 5.47 8.90 -89.70 -0.80 4.67 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.14 6.44 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -67.35 269.01 0.46 -66.89 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.34 Total: 21.86 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 4.92 Total: -1.23 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -6.83 Total: -127.60 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -67.35 0.46 -66.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240467439.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.164 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds