Wall clock time and date at job start Sun Mar 29 2020 21:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86800 * 120.00489 * 2 1 4 4 H 1.48498 * 109.46878 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47195 * 120.00142 * 3 2 1 6 6 H 1.48509 * 109.46946 * 240.00314 * 3 2 1 7 7 C 1.40097 * 119.99571 * 179.72452 * 2 1 3 8 8 H 1.08001 * 119.99701 * 158.97833 * 7 2 1 9 9 C 1.40392 * 119.99808 * 338.98012 * 7 2 1 10 10 N 1.34117 * 120.61019 * 341.97433 * 9 7 2 11 11 C 1.31520 * 119.89316 * 179.71880 * 10 9 7 12 12 C 1.39112 * 121.24322 * 0.57120 * 11 10 9 13 13 N 1.31782 * 121.28757 * 359.70735 * 12 11 10 14 14 C 1.33514 * 119.98292 * 0.02562 * 13 12 11 15 15 C 1.46133 * 120.59602 * 179.97438 * 14 13 12 16 16 C 1.34272 * 118.75880 * 117.10514 * 15 14 13 17 17 N 1.37105 * 121.66492 * 180.30423 * 16 15 14 18 18 C 1.46959 * 119.08367 * 346.62667 * 17 16 15 19 19 C 1.53498 * 107.84618 * 44.19362 * 18 17 16 20 20 C 1.50277 * 118.75580 * 297.37449 * 15 14 13 21 21 H 0.96991 * 120.00509 * 174.60477 * 1 2 3 22 22 H 1.08000 * 119.37924 * 180.27702 * 11 10 9 23 23 H 1.08001 * 119.35442 * 179.73524 * 12 11 10 24 24 H 1.08002 * 119.17369 * 0.58876 * 16 15 14 25 25 H 0.96998 * 120.42705 * 166.36449 * 17 16 15 26 26 H 1.08997 * 109.78910 * 284.60274 * 18 17 16 27 27 H 1.09005 * 109.78591 * 163.77744 * 18 17 16 28 28 H 1.08997 * 109.61533 * 178.75623 * 19 18 17 29 29 H 1.09000 * 109.75745 * 58.32232 * 19 18 17 30 30 H 1.09005 * 109.35158 * 280.32901 * 20 15 14 31 31 H 1.09004 * 109.35592 * 39.89359 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2767 2.7464 -0.0006 5 1 3.0954 1.6963 1.2125 6 1 3.0954 1.6962 -1.2126 7 6 2.0079 -1.2133 0.0058 8 1 3.0340 -1.2461 -0.3295 9 6 1.3759 -2.3865 0.4476 10 7 0.2605 -2.3234 1.1897 11 6 -0.3231 -3.4315 1.5913 12 6 0.2008 -4.6798 1.2713 13 7 1.2971 -4.7974 0.5496 14 6 1.9276 -3.7052 0.1111 15 6 3.1446 -3.8200 -0.6897 16 6 3.1356 -3.3541 -1.9490 17 7 4.2418 -3.4367 -2.7548 18 6 5.5405 -3.7700 -2.1533 19 6 5.3199 -4.9269 -1.1689 20 6 4.3569 -4.4605 -0.0747 21 1 -0.4850 -0.8362 -0.0790 22 1 -1.2234 -3.3711 2.1848 23 1 -0.3011 -5.5700 1.6207 24 1 2.2358 -2.8987 -2.3355 25 1 4.1669 -3.2809 -3.7093 26 1 5.9344 -2.9036 -1.6221 27 1 6.2399 -4.0759 -2.9314 28 1 6.2717 -5.2129 -0.7212 29 1 4.8915 -5.7807 -1.6938 30 1 4.8614 -3.7375 0.5663 31 1 4.0482 -5.3174 0.5241 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243947283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:48 Heat of formation + Delta-G solvation = 16.344394 kcal Electronic energy + Delta-G solvation = -15859.276287 eV Core-core repulsion = 13331.728351 eV Total energy + Delta-G solvation = -2527.547936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76069 -39.27864 -36.21792 -34.40347 -33.10437 -32.73413 -30.25075 -27.74669 -25.66546 -24.47951 -23.70987 -22.78022 -20.07977 -19.16276 -18.32642 -17.75581 -16.62506 -16.16983 -15.63008 -15.48599 -15.27398 -14.74195 -14.31742 -14.18838 -13.96706 -13.69987 -13.30389 -12.91786 -12.75306 -11.99952 -11.86178 -11.82098 -11.67138 -11.53981 -11.47734 -11.00150 -10.92215 -9.78928 -9.59308 -8.95715 -7.96420 -6.60926 0.50275 0.98009 1.51718 1.66187 1.73642 1.81405 2.31490 2.73000 2.86616 3.60641 3.91533 4.07304 4.16122 4.21519 4.26182 4.42072 4.58619 4.71434 4.83554 4.86444 4.97199 5.06783 5.08874 5.21754 5.40462 5.56558 5.64778 5.72401 5.89834 5.91649 6.56409 6.62416 6.77380 7.14399 7.31821 7.77663 8.00289 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.011890 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.876080 B = 2354.442106 C = 3502.058962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C -0.002 4.002 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.247 1.247 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.175 3.825 10 N -0.567 5.567 11 C 0.076 3.924 12 C -0.141 4.141 13 N -0.440 5.440 14 C 0.016 3.984 15 C -0.196 4.196 16 C 0.153 3.847 17 N -0.739 5.739 18 C 0.121 3.879 19 C -0.126 4.126 20 C -0.049 4.049 21 H 0.293 0.707 22 H 0.154 0.846 23 H 0.152 0.848 24 H 0.105 0.895 25 H 0.409 0.591 26 H 0.054 0.946 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -2.075 -5.551 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.224 4.224 3 Si 0.936 3.064 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.171 1.171 7 C -0.494 4.494 8 H 0.114 0.886 9 C 0.049 3.951 10 N -0.287 5.287 11 C -0.088 4.088 12 C -0.297 4.297 13 N -0.152 5.152 14 C -0.137 4.137 15 C -0.208 4.208 16 C 0.028 3.972 17 N -0.369 5.369 18 C -0.003 4.003 19 C -0.164 4.164 20 C -0.087 4.087 21 H 0.107 0.893 22 H 0.172 0.828 23 H 0.169 0.831 24 H 0.122 0.878 25 H 0.245 0.755 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.825 -0.553 -5.367 11.209 hybrid contribution -0.825 -1.926 0.200 2.105 sum 9.000 -2.480 -5.168 10.670 Atomic orbital electron populations 1.70318 1.09296 1.34608 1.25211 1.28698 0.95763 1.07540 0.90419 0.82995 0.74727 0.69296 0.79423 1.19629 1.19060 1.17085 1.20609 1.00940 0.92604 1.35214 0.88624 1.21042 0.89767 0.93941 0.90351 1.68967 1.12897 1.30172 1.16621 1.23563 0.98771 0.90077 0.96423 1.22778 0.99203 0.97721 1.10007 1.68083 1.06977 1.32675 1.07442 1.21754 0.99238 0.88289 1.04408 1.18574 0.93901 1.13013 0.95283 1.20345 0.90555 0.95036 0.91280 1.43945 1.05910 1.77836 1.09196 1.21678 0.84796 0.96654 0.97188 1.21818 0.99539 0.98228 0.96813 1.19935 0.93228 0.97985 0.97536 0.89280 0.82835 0.83051 0.87751 0.75535 0.92748 0.87117 0.88691 0.92135 0.93536 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.56 13.12 21.85 0.29 -42.27 16 2 C 0.00 -0.08 5.31 85.31 0.45 0.37 16 3 Si 1.12 41.87 29.98 68.60 2.06 43.92 16 4 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.25 -8.11 7.11 99.48 0.71 -7.40 16 7 C -0.46 -24.45 8.17 23.25 0.19 -24.26 16 8 H 0.10 4.81 6.85 -2.91 -0.02 4.79 16 9 C 0.17 9.77 6.31 41.57 0.26 10.03 16 10 N -0.57 -31.93 7.83 -183.95 -1.44 -33.37 16 11 C 0.08 3.81 11.16 84.95 0.95 4.75 16 12 C -0.14 -6.84 11.17 84.91 0.95 -5.89 16 13 N -0.44 -22.87 10.47 -179.43 -1.88 -24.75 16 14 C 0.02 0.84 6.24 43.19 0.27 1.11 16 15 C -0.20 -8.57 4.79 -18.85 -0.09 -8.66 16 16 C 0.15 5.88 9.36 82.96 0.78 6.65 16 17 N -0.74 -20.45 5.74 -345.27 -1.98 -22.43 16 18 C 0.12 2.76 7.12 86.46 0.62 3.37 16 19 C -0.13 -3.30 6.17 30.78 0.19 -3.11 16 20 C -0.05 -1.82 5.84 29.73 0.17 -1.64 16 21 H 0.29 17.14 6.45 -92.72 -0.60 16.55 16 22 H 0.15 6.46 8.06 -2.91 -0.02 6.43 16 23 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 24 H 0.10 4.41 8.02 -2.91 -0.02 4.38 16 25 H 0.41 8.84 8.95 -92.71 -0.83 8.00 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.79 265.37 2.27 -65.52 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.49 Total: 30.64 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.74 Total: -17.26 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -5.01 Total: -122.82 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.06 Total: 43.92 kcal Total: -67.79 2.27 -65.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243947283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.867 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds