Wall clock time and date at job start Sun Mar 29 2020 21:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86806 * 119.99998 * 2 1 4 4 H 1.48506 * 109.46731 * 264.85944 * 3 2 1 5 5 H 1.48495 * 109.46981 * 24.85790 * 3 2 1 6 6 H 1.48502 * 109.46763 * 144.86033 * 3 2 1 7 7 C 1.40009 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00249 * 347.12263 * 7 2 1 9 9 C 1.41376 * 119.99663 * 167.12684 * 7 2 1 10 10 C 1.40735 * 119.75365 * 172.63926 * 9 7 2 11 11 C 1.38282 * 119.22162 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.70576 * 0.02562 * 11 10 9 13 13 C 1.40060 * 119.44858 * 359.97438 * 12 11 10 14 14 C 1.47707 * 119.62457 * 180.02562 * 13 12 11 15 15 C 1.31733 * 118.68876 * 354.76816 * 14 13 12 16 16 C 1.50406 * 122.29292 * 180.37461 * 15 14 13 17 17 C 1.53106 * 109.58266 * 343.34850 * 16 15 14 18 18 O 1.43278 * 108.46174 * 48.07379 * 17 16 15 19 19 C 1.42893 * 113.08323 * 291.28907 * 18 17 16 20 20 N 1.32406 * 120.74726 * 0.27650 * 13 12 11 21 21 H 0.97006 * 119.99899 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.39510 * 0.02562 * 10 9 7 23 23 H 1.07999 * 120.64613 * 179.97438 * 11 10 9 24 24 H 1.07996 * 120.27114 * 180.02562 * 12 11 10 25 25 H 1.08004 * 118.85505 * 0.08921 * 15 14 13 26 26 H 1.09001 * 109.45456 * 103.38213 * 16 15 14 27 27 H 1.09005 * 109.45895 * 223.31474 * 16 15 14 28 28 H 1.09001 * 109.61998 * 288.38921 * 17 16 15 29 29 H 1.09001 * 109.82296 * 167.87700 * 17 16 15 30 30 H 1.09008 * 109.36794 * 290.27503 * 19 18 17 31 31 H 1.08997 * 109.36844 * 170.66169 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.5976 1.9837 -1.3945 5 1 1.3889 2.6816 0.5885 6 1 3.4805 1.4739 0.8059 7 6 2.0075 -1.2125 -0.0005 8 1 1.4879 -2.1361 0.2075 9 6 3.3946 -1.2278 -0.2733 10 6 4.1232 -2.4222 -0.1211 11 6 5.4794 -2.4247 -0.3914 12 6 6.0784 -1.2443 -0.8050 13 6 5.3005 -0.0872 -0.9381 14 6 5.9344 1.1721 -1.3788 15 6 7.2420 1.2005 -1.5365 16 6 7.9718 2.4407 -1.9739 17 6 6.9768 3.4361 -2.5766 18 8 5.8588 3.5542 -1.6882 19 6 5.0620 2.3695 -1.6299 20 7 4.0043 -0.1082 -0.6686 21 1 -0.4850 0.8401 0.0004 22 1 3.6290 -3.3263 0.2023 23 1 6.0608 -3.3282 -0.2818 24 1 7.1357 -1.2177 -1.0233 25 1 7.8102 0.3031 -1.3406 26 1 8.4637 2.8948 -1.1138 27 1 8.7197 2.1771 -2.7219 28 1 6.6373 3.0725 -3.5464 29 1 7.4537 4.4088 -2.6965 30 1 4.5354 2.2410 -2.5757 31 1 4.3348 2.4623 -0.8233 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245155650.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:52 Heat of formation + Delta-G solvation = -28.546989 kcal Electronic energy + Delta-G solvation = -15856.795326 eV Core-core repulsion = 13295.008002 eV Total energy + Delta-G solvation = -2561.787323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.98085 -39.81080 -36.01905 -35.00287 -33.34118 -32.80505 -30.85154 -27.96670 -26.30323 -25.31521 -23.19638 -22.86924 -19.82683 -18.98383 -18.45089 -17.37199 -16.75829 -16.62206 -16.48552 -16.07796 -14.90842 -14.75560 -14.70881 -14.61344 -14.10763 -13.81745 -13.63438 -13.16832 -12.80594 -12.72272 -12.47795 -12.16122 -11.95219 -11.55021 -11.41641 -10.70982 -10.62681 -10.35263 -9.63625 -9.18736 -8.95017 -6.75371 0.13620 0.73886 1.35456 1.41594 1.55769 1.62503 2.34983 2.59611 2.85268 3.46184 3.61557 3.67511 3.99608 4.18686 4.27622 4.28219 4.38543 4.46403 4.57203 4.64520 4.71643 4.77946 4.91351 5.01332 5.05783 5.22393 5.40441 5.50772 5.64903 5.72855 5.94002 6.06129 6.10844 6.53133 6.58925 7.59833 8.00992 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.011188 C = 0.007978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.656073 B = 2502.153226 C = 3508.945001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.053 3.947 3 Si 1.044 2.956 4 H -0.268 1.268 5 H -0.325 1.325 6 H -0.284 1.284 7 C -0.451 4.451 8 H 0.076 0.924 9 C 0.232 3.768 10 C -0.275 4.275 11 C -0.039 4.039 12 C -0.284 4.284 13 C 0.176 3.824 14 C -0.147 4.147 15 C -0.108 4.108 16 C -0.119 4.119 17 C 0.040 3.960 18 O -0.397 6.397 19 C 0.103 3.897 20 N -0.587 5.587 21 H 0.297 0.703 22 H 0.117 0.883 23 H 0.151 0.849 24 H 0.148 0.852 25 H 0.140 0.860 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.057 0.943 29 H 0.127 0.873 30 H 0.054 0.946 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.392 4.504 -4.640 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.166 4.166 3 Si 0.880 3.120 4 H -0.195 1.195 5 H -0.258 1.258 6 H -0.212 1.212 7 C -0.483 4.483 8 H 0.094 0.906 9 C 0.107 3.893 10 C -0.297 4.297 11 C -0.063 4.063 12 C -0.306 4.306 13 C 0.038 3.962 14 C -0.148 4.148 15 C -0.127 4.127 16 C -0.155 4.155 17 C -0.035 4.035 18 O -0.316 6.316 19 C 0.027 3.973 20 N -0.306 5.306 21 H 0.107 0.893 22 H 0.135 0.865 23 H 0.169 0.831 24 H 0.165 0.835 25 H 0.157 0.843 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.072 0.928 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.536 5.395 -4.611 16.176 hybrid contribution -0.165 -0.801 0.189 0.839 sum 14.371 4.594 -4.423 15.722 Atomic orbital electron populations 1.69642 1.09137 1.32005 1.34671 1.26905 0.95390 1.05366 0.88962 0.84125 0.74714 0.73633 0.79559 1.19513 1.25809 1.21245 1.19521 0.91486 0.95569 1.41737 0.90600 1.18708 0.93363 0.88376 0.88872 1.21875 0.95781 0.98630 1.13411 1.21395 0.93643 0.98174 0.93042 1.21666 1.00918 0.93072 1.14991 1.20123 0.89346 0.93523 0.93248 1.20371 0.95953 0.93484 1.05004 1.23138 0.93174 1.00749 0.95676 1.21255 0.98495 0.92652 1.03148 1.23059 0.86393 1.01937 0.92149 1.88086 1.41706 1.35007 1.66850 1.21411 0.92064 0.82929 1.00908 1.66600 1.11379 1.28849 1.23815 0.89285 0.86526 0.83123 0.83470 0.84282 0.88301 0.86014 0.92475 0.85469 0.92799 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.88 13.92 21.83 0.30 -46.57 16 2 C 0.05 2.99 5.52 85.28 0.47 3.46 16 3 Si 1.04 53.10 22.25 68.60 1.53 54.62 16 4 H -0.27 -13.30 5.87 99.48 0.58 -12.72 16 5 H -0.32 -15.80 7.11 99.48 0.71 -15.09 16 6 H -0.28 -15.18 6.45 99.48 0.64 -14.53 16 7 C -0.45 -26.12 9.67 23.47 0.23 -25.89 16 8 H 0.08 4.51 8.06 -2.91 -0.02 4.49 16 9 C 0.23 12.44 6.33 40.28 0.25 12.70 16 10 C -0.28 -12.68 9.83 22.89 0.23 -12.46 16 11 C -0.04 -1.48 10.14 22.39 0.23 -1.26 16 12 C -0.28 -10.78 9.39 22.82 0.21 -10.56 16 13 C 0.18 7.83 6.72 42.00 0.28 8.11 16 14 C -0.15 -5.57 5.89 -18.21 -0.11 -5.67 16 15 C -0.11 -2.99 9.41 24.88 0.23 -2.75 16 16 C -0.12 -2.32 6.36 29.79 0.19 -2.13 16 17 C 0.04 0.92 6.88 72.02 0.50 1.41 16 18 O -0.40 -13.53 10.83 -148.98 -1.61 -15.15 16 19 C 0.10 4.12 5.43 71.10 0.39 4.51 16 20 N -0.59 -30.49 4.34 -178.52 -0.77 -31.26 16 21 H 0.30 15.23 8.29 -92.70 -0.77 14.46 16 22 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 23 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 24 H 0.15 4.30 6.03 -2.91 -0.02 4.29 16 25 H 0.14 3.29 5.75 -2.91 -0.02 3.27 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 2.18 8.03 -2.38 -0.02 2.16 16 31 H 0.08 3.61 3.68 -2.39 -0.01 3.60 16 Total: -1.00 -66.65 250.82 3.49 -63.15 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.95 Total: 5.74 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.10 Total: -30.53 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -0.47 Total: -77.83 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.61 Total: -15.15 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 1.53 Total: 54.62 kcal Total: -66.65 3.49 -63.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245155650.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.604 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds