Wall clock time and date at job start Sun Mar 29 2020 21:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86793 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47377 * 239.99980 * 3 2 1 5 5 H 1.48500 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47033 * 119.99873 * 3 2 1 7 7 C 1.40172 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99296 * 180.02562 * 7 2 1 9 9 C 1.40672 * 120.00371 * 0.02562 * 7 2 1 10 10 N 1.33719 * 119.96018 * 359.97438 * 9 7 2 11 11 C 1.31259 * 121.65413 * 180.02562 * 10 9 7 12 12 C 1.39125 * 121.40123 * 359.97438 * 11 10 9 13 13 C 1.38262 * 119.76248 * 0.02562 * 12 11 10 14 14 C 1.39969 * 118.45284 * 359.97438 * 13 12 11 15 15 C 1.47066 * 120.67681 * 179.97438 * 14 13 12 16 16 C 1.32349 * 118.73159 * 104.99745 * 15 14 13 17 17 C 1.50420 * 122.21420 * 180.36723 * 16 15 14 18 18 C 1.53110 * 109.57390 * 343.31923 * 17 16 15 19 19 O 1.43269 * 108.47413 * 48.17532 * 18 17 16 20 20 C 1.43026 * 112.96654 * 290.93723 * 19 18 17 21 21 H 0.97003 * 119.99746 * 0.02562 * 1 2 3 22 22 H 1.08000 * 119.29573 * 180.28024 * 11 10 9 23 23 H 1.07999 * 120.11796 * 180.02562 * 12 11 10 24 24 H 1.07994 * 120.77219 * 179.97438 * 13 12 11 25 25 H 1.08001 * 118.89173 * 0.34705 * 16 15 14 26 26 H 1.08998 * 109.45338 * 103.35467 * 17 16 15 27 27 H 1.09000 * 109.45145 * 223.30837 * 17 16 15 28 28 H 1.09004 * 109.64173 * 167.87072 * 18 17 16 29 29 H 1.08999 * 109.63816 * 288.27483 * 18 17 16 30 30 H 1.09001 * 109.55784 * 290.65726 * 20 19 18 31 31 H 1.08995 * 109.25399 * 170.99282 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2759 2.7464 0.0006 6 1 3.0946 1.6963 1.2126 7 6 2.0076 -1.2140 0.0005 8 1 3.0877 -1.2139 0.0010 9 6 1.3043 -2.4322 0.0005 10 7 -0.0329 -2.4313 0.0005 11 6 -0.7226 -3.5481 0.0010 12 6 -0.0930 -4.7888 0.0011 13 6 1.2879 -4.8577 0.0011 14 6 2.0153 -3.6619 0.0005 15 6 3.4859 -3.6782 0.0011 16 6 4.1258 -3.3857 -1.1199 17 6 5.6273 -3.3866 -1.2097 18 6 6.2255 -3.3488 0.1992 19 8 5.5697 -4.3412 0.9977 20 6 4.2039 -4.0204 1.2761 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8016 -3.5029 -0.0036 23 1 -0.6809 -5.6948 0.0011 24 1 1.7934 -5.8120 0.0015 25 1 3.5505 -3.1383 -1.9998 26 1 5.9598 -4.2899 -1.7211 27 1 5.9581 -2.5108 -1.7679 28 1 7.2927 -3.5648 0.1501 29 1 6.0713 -2.3622 0.6363 30 1 4.1602 -3.1691 1.9553 31 1 3.7213 -4.8786 1.7436 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245161776.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:27 Heat of formation + Delta-G solvation = -22.134063 kcal Electronic energy + Delta-G solvation = -15842.240800 eV Core-core repulsion = 13280.731562 eV Total energy + Delta-G solvation = -2561.509238 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59449 -39.50594 -35.56166 -35.12176 -33.01705 -32.12740 -30.34954 -27.56907 -26.18050 -24.92324 -23.28363 -22.57300 -19.37737 -19.07364 -17.63722 -17.27519 -17.03149 -16.29934 -16.13438 -15.80361 -14.78229 -14.66687 -14.34507 -13.97381 -13.75380 -13.52376 -13.37680 -12.94401 -12.86838 -12.76134 -12.43388 -12.17103 -11.84287 -11.39606 -11.25195 -10.60341 -10.11329 -9.76975 -9.45757 -9.21550 -8.31291 -6.49608 0.79043 1.08805 1.37119 1.39248 1.49089 1.53070 2.19219 2.82776 2.98266 3.84280 3.96175 4.11680 4.20070 4.28129 4.36848 4.45626 4.48220 4.62329 4.69475 4.80338 4.84100 4.99054 5.07797 5.08807 5.20941 5.43244 5.62162 5.72943 5.92144 6.05107 6.16397 6.26677 6.29610 6.71615 6.98379 8.17167 8.41213 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.012155 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.202154 B = 2303.027274 C = 3504.402439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.024 3.976 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.448 4.448 8 H 0.089 0.911 9 C 0.235 3.765 10 N -0.523 5.523 11 C 0.104 3.896 12 C -0.313 4.313 13 C -0.050 4.050 14 C -0.240 4.240 15 C -0.083 4.083 16 C -0.163 4.163 17 C -0.112 4.112 18 C 0.052 3.948 19 O -0.391 6.391 20 C 0.108 3.892 21 H 0.279 0.721 22 H 0.136 0.864 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.125 0.875 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -2.400 -0.276 9.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.111 3.889 10 N -0.235 5.235 11 C -0.061 4.061 12 C -0.335 4.335 13 C -0.074 4.074 14 C -0.245 4.245 15 C -0.084 4.084 16 C -0.181 4.181 17 C -0.149 4.149 18 C -0.024 4.024 19 O -0.310 6.310 20 C 0.032 3.968 21 H 0.090 0.910 22 H 0.153 0.847 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.143 0.857 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.351 -1.602 -0.209 8.505 hybrid contribution -0.174 0.057 -0.211 0.280 sum 8.176 -1.546 -0.420 8.332 Atomic orbital electron populations 1.70206 1.08931 1.29218 1.29093 1.27037 0.95660 1.04572 0.92586 0.85312 0.78843 0.75711 0.80275 1.18094 1.19260 1.18119 1.19779 0.94777 0.90080 1.43269 0.89323 1.19049 0.88274 0.92513 0.89073 1.68679 1.07983 1.28305 1.18551 1.23019 0.99813 0.89187 0.94112 1.21538 0.95070 0.98285 1.18654 1.21281 0.94002 0.96559 0.95559 1.19725 0.93094 0.93866 1.17797 1.20122 0.92070 1.00366 0.95821 1.22663 0.96483 1.01911 0.97071 1.21081 0.91276 1.03762 0.98755 1.22863 0.98050 0.91823 0.89695 1.88054 1.23457 1.47325 1.72145 1.21288 0.81092 1.00898 0.93519 0.90999 0.84668 0.85628 0.85991 0.89633 0.89297 0.88697 0.85682 0.93026 0.92494 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.78 11.46 21.86 0.25 -40.53 16 2 C 0.02 1.21 5.50 85.33 0.47 1.68 16 3 Si 0.98 37.87 29.56 68.60 2.03 39.90 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.45 -24.04 8.64 23.33 0.20 -23.84 16 8 H 0.09 4.50 6.45 -2.91 -0.02 4.48 16 9 C 0.23 12.97 6.58 40.39 0.27 13.23 16 10 N -0.52 -29.56 7.85 -188.30 -1.48 -31.04 16 11 C 0.10 5.13 11.17 84.99 0.95 6.08 16 12 C -0.31 -13.77 10.10 22.49 0.23 -13.55 16 13 C -0.05 -2.22 9.92 22.70 0.23 -1.99 16 14 C -0.24 -11.60 5.19 -19.60 -0.10 -11.70 16 15 C -0.08 -3.43 4.19 -18.77 -0.08 -3.51 16 16 C -0.16 -6.20 8.94 24.51 0.22 -5.98 16 17 C -0.11 -3.12 6.36 29.80 0.19 -2.93 16 18 C 0.05 1.38 6.87 72.02 0.49 1.88 16 19 O -0.39 -12.81 10.84 -148.98 -1.62 -14.42 16 20 C 0.11 3.94 6.75 71.10 0.48 4.42 16 21 H 0.28 13.71 8.29 -92.71 -0.77 12.94 16 22 H 0.14 5.88 8.06 -2.91 -0.02 5.85 16 23 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 24 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 25 H 0.09 3.59 8.00 -2.91 -0.02 3.56 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -63.18 266.96 3.85 -59.33 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.12 Total: 22.98 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 3.54 Total: -36.21 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.23 Total: -71.58 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.62 Total: -14.42 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Total: -63.18 3.85 -59.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245161776.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.193 kcal (2) G-P(sol) polarization free energy of solvation -63.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds