Wall clock time and date at job start Sun Mar 29 2020 22:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00058 * 2 1 4 4 C 1.53006 * 109.46995 * 270.00039 * 3 2 1 5 5 C 1.47201 * 109.47093 * 179.97438 * 4 3 2 6 6 N 4.80465 * 118.48616 * 340.02564 * 2 1 3 7 7 C 1.38817 * 119.99780 * 179.97438 * 2 1 3 8 8 C 1.39804 * 119.58424 * 184.72847 * 7 2 1 9 9 C 1.38597 * 119.49213 * 179.78957 * 8 7 2 10 10 C 1.38391 * 118.67987 * 0.47692 * 9 8 7 11 11 C 1.40560 * 119.14778 * 359.74416 * 10 9 8 12 12 C 1.41317 * 119.78037 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.40026 * 119.99466 * 180.02562 * 12 11 10 15 15 N 1.30746 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99672 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47199 * 60.00203 * 16 14 12 18 18 H 1.48497 * 109.47295 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47424 * 300.00309 * 16 14 12 20 20 N 1.31953 * 119.58998 * 5.00141 * 7 2 1 21 21 H 1.09001 * 109.46957 * 89.99817 * 1 2 3 22 22 H 1.08996 * 109.47199 * 210.00336 * 1 2 3 23 23 H 1.09003 * 109.46945 * 330.00267 * 1 2 3 24 24 H 1.09001 * 109.47464 * 150.00300 * 3 2 1 25 25 H 1.09001 * 109.47459 * 30.00015 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99701 * 4 3 2 27 27 H 1.08993 * 109.46955 * 60.00138 * 4 3 2 28 28 H 1.07998 * 120.25010 * 359.97438 * 8 7 2 29 29 H 1.07992 * 120.65842 * 180.22080 * 9 8 7 30 30 H 1.07996 * 120.42791 * 179.76624 * 10 9 8 31 31 H 0.97006 * 119.99326 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.1880 2.9855 -1.4426 6 7 3.7566 3.9689 -1.4426 7 6 2.1591 -1.2022 0.0005 8 6 3.5535 -1.1942 0.1008 9 6 4.2442 -2.3957 0.1055 10 6 3.5269 -3.5745 0.0001 11 6 2.1262 -3.5168 -0.1025 12 6 1.3805 -4.7123 -0.2103 13 1 1.8868 -5.6662 -0.2131 14 6 -0.0150 -4.6600 -0.3133 15 7 -0.6279 -3.5052 -0.3104 16 14 -1.0008 -6.2403 -0.4564 17 1 -0.7609 -7.0836 0.7421 18 1 -2.4465 -5.9149 -0.5520 19 1 -0.5785 -6.9787 -1.6738 20 7 1.4949 -2.3380 -0.0990 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 3.1500 1.1384 0.5138 25 1 1.6085 2.0284 0.5138 26 1 3.0416 0.9507 -1.9564 27 1 1.5001 1.8407 -1.9563 28 1 4.0881 -0.2589 0.1769 29 1 5.3210 -2.4116 0.1857 30 1 4.0367 -4.5266 -0.0029 31 1 -1.5947 -3.4691 -0.3814 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320359620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:39 Heat of formation + Delta-G solvation = 55.700519 kcal Electronic energy + Delta-G solvation = -15409.175283 eV Core-core repulsion = 12883.333957 eV Total energy + Delta-G solvation = -2525.841326 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24721 -38.18033 -37.01687 -35.19068 -32.91947 -31.85517 -30.80605 -28.11193 -26.38292 -24.72230 -22.96976 -21.37996 -19.25678 -18.50944 -17.77000 -16.61008 -16.41595 -16.04436 -15.68241 -15.39104 -14.99205 -14.60381 -14.18979 -13.87716 -13.63016 -13.47039 -13.19519 -12.81359 -12.77473 -12.65069 -12.50930 -12.45239 -12.12204 -11.74187 -11.66297 -11.18674 -10.41884 -9.74074 -9.32834 -8.16892 -8.11328 -6.39356 1.12411 1.40644 1.46779 1.56568 1.62892 1.74912 1.81904 2.30110 2.41727 2.98664 3.23196 4.06064 4.08358 4.24440 4.40825 4.57326 4.64922 4.76228 4.91021 5.00023 5.05621 5.07845 5.16280 5.21027 5.40840 5.49280 5.81206 6.05142 6.18091 6.22406 6.57682 6.66804 6.73908 6.96566 7.26478 8.40885 8.57128 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036756 B = 0.006787 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.599718 B = 4124.760157 C = 4705.160899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.618 5.618 3 C 0.140 3.860 4 C -0.038 4.038 5 C 0.246 3.754 6 N -0.493 5.493 7 C 0.394 3.606 8 C -0.363 4.363 9 C -0.031 4.031 10 C -0.347 4.347 11 C 0.260 3.740 12 C -0.473 4.473 13 H 0.080 0.920 14 C 0.032 3.968 15 N -0.741 5.741 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.268 1.268 19 H -0.264 1.264 20 N -0.552 5.552 21 H 0.034 0.966 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 5.262 -0.528 5.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.080 4.080 5 C -0.071 4.071 6 N -0.171 5.171 7 C 0.155 3.845 8 C -0.389 4.389 9 C -0.056 4.056 10 C -0.370 4.370 11 C 0.133 3.867 12 C -0.504 4.504 13 H 0.099 0.901 14 C -0.190 4.190 15 N -0.363 5.363 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.192 1.192 19 H -0.189 1.189 20 N -0.274 5.274 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.114 0.886 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.402 6.961 -0.596 7.126 hybrid contribution 0.441 -1.259 -0.083 1.337 sum -0.962 5.702 -0.679 5.822 Atomic orbital electron populations 1.21355 0.79080 1.01924 1.00434 1.46078 1.05292 1.01593 1.80481 1.21283 0.98485 0.84704 0.94085 1.19877 1.00580 0.86289 1.01260 1.29272 0.92193 0.94008 0.91589 1.81236 1.11769 1.13804 1.10282 1.18913 0.88279 0.87550 0.89801 1.21013 0.93107 0.98193 1.26556 1.20987 0.98754 0.92153 0.93658 1.21677 0.95338 0.97700 1.22307 1.18614 0.89501 0.91224 0.87359 1.19856 0.92583 0.92918 1.45088 0.90134 1.26781 0.98891 1.00517 0.92846 1.70193 1.09904 1.26950 1.29239 0.85324 0.77112 0.77959 0.79610 1.18899 1.19186 1.18850 1.68194 1.37408 0.96149 1.25640 0.94766 0.92826 0.90264 0.90179 0.87960 0.87344 0.85346 0.85782 0.85767 0.88593 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.76 10.46 127.77 1.34 5.10 16 2 N -0.62 -21.03 2.98 -728.73 -2.17 -23.20 16 3 C 0.14 3.29 5.24 86.38 0.45 3.74 16 4 C -0.04 -0.76 6.03 28.79 0.17 -0.59 16 5 C 0.25 5.65 15.43 89.44 1.38 7.03 16 6 N -0.49 -14.04 18.54 20.01 0.37 -13.67 16 7 C 0.39 17.44 7.37 133.42 0.98 18.42 16 8 C -0.36 -14.88 9.29 22.73 0.21 -14.67 16 9 C -0.03 -1.34 10.15 22.39 0.23 -1.12 16 10 C -0.35 -17.17 9.83 22.87 0.22 -16.95 16 11 C 0.26 14.20 6.55 40.18 0.26 14.46 16 12 C -0.47 -25.42 9.14 23.46 0.21 -25.21 16 13 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 14 C 0.03 1.60 5.50 85.29 0.47 2.07 16 15 N -0.74 -37.53 11.46 21.84 0.25 -37.28 16 16 Si 0.98 37.33 29.56 68.60 2.03 39.36 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 N -0.55 -28.92 6.64 -186.58 -1.24 -30.16 16 21 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.05 2.20 7.44 -2.39 -0.02 2.19 16 23 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 24 H 0.08 1.95 5.97 -2.39 -0.01 1.93 16 25 H 0.10 1.87 7.89 -2.39 -0.02 1.85 16 26 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.12 4.22 6.01 -2.91 -0.02 4.20 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.28 12.65 8.29 -92.70 -0.77 11.88 16 Total: -1.00 -63.72 277.36 6.31 -57.42 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.14 Total: 15.25 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.94 Total: -7.71 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -2.79 Total: -104.31 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -63.72 6.31 -57.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320359620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.117 kcal (2) G-P(sol) polarization free energy of solvation -63.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds