Wall clock time and date at job start Sun Mar 29 2020 21:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 F 1.39896 * 109.47351 * 239.99332 * 2 1 3 5 5 C 1.50707 * 109.46841 * 119.99613 * 2 1 3 6 6 O 1.21279 * 119.99658 * 355.00466 * 5 2 1 7 7 N 1.34771 * 120.00011 * 174.99766 * 5 2 1 8 8 C 1.47584 * 134.49657 * 179.97438 * 7 5 2 9 9 C 1.53946 * 86.12025 * 155.36378 * 8 7 5 10 10 O 1.42897 * 113.74068 * 269.15867 * 9 8 7 11 11 C 1.50700 * 113.74246 * 137.95222 * 9 8 7 12 12 H 1.07998 * 119.99659 * 4.91778 * 11 9 8 13 13 C 1.37870 * 120.00275 * 184.91298 * 11 9 8 14 14 N 1.31521 * 119.99939 * 13.83955 * 13 11 9 15 15 Si 1.86793 * 120.00241 * 193.83635 * 13 11 9 16 16 H 1.48503 * 109.47305 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47166 * 299.99995 * 15 13 11 18 18 H 1.48499 * 109.46987 * 59.99962 * 15 13 11 19 19 C 1.47585 * 134.49296 * 0.02562 * 7 5 2 20 20 H 1.08997 * 109.47135 * 300.00135 * 1 2 3 21 21 H 1.09008 * 109.46783 * 60.00480 * 1 2 3 22 22 H 1.09001 * 109.47089 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47201 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47364 * 299.99562 * 3 2 1 25 25 H 1.08997 * 109.47239 * 59.99929 * 3 2 1 26 26 H 1.09003 * 113.76727 * 41.05948 * 8 7 5 27 27 H 1.09000 * 113.86995 * 269.68290 * 8 7 5 28 28 H 0.96698 * 114.00098 * 171.44601 * 10 9 8 29 29 H 0.97007 * 119.99483 * 5.87247 * 14 13 11 30 30 H 1.08994 * 113.77423 * 90.33340 * 19 7 5 31 31 H 1.09010 * 113.76672 * 318.93187 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 1.2478 -1.0913 2.0734 7 7 3.3531 -0.9224 1.3943 8 6 4.1763 -1.5621 2.4389 9 6 5.2186 -1.7921 1.3295 10 8 5.0716 -3.0418 0.6523 11 6 6.6363 -1.5222 1.7635 12 1 6.8481 -1.2764 2.7936 13 6 7.6628 -1.5891 0.8456 14 7 7.3934 -1.6163 -0.4415 15 14 9.4363 -1.6411 1.4298 16 1 10.3425 -1.7103 0.2553 17 1 9.7354 -0.4159 2.2137 18 1 9.6409 -2.8380 2.2847 19 6 4.5573 -0.6073 0.6014 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.7462 -2.4819 2.8353 27 1 4.5090 -0.8775 3.2192 28 1 5.6364 -3.1356 -0.1270 29 1 6.4800 -1.5035 -0.7482 30 1 5.0011 0.3588 0.8415 31 1 4.4316 -0.7648 -0.4699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321207689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:54 Heat of formation + Delta-G solvation = -126.592796 kcal Electronic energy + Delta-G solvation = -17090.081542 eV Core-core repulsion = 14093.273408 eV Total energy + Delta-G solvation = -2996.808133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.03247 -41.44845 -39.50469 -36.22165 -34.73009 -34.35838 -30.56117 -28.48429 -27.31678 -26.98810 -24.21963 -21.79578 -20.38091 -19.83996 -18.48521 -17.75267 -17.17509 -16.74647 -16.40856 -16.11856 -15.72879 -15.47187 -14.78517 -14.51900 -14.18709 -13.99039 -13.60153 -13.44750 -13.40100 -13.16854 -13.02621 -12.95905 -12.62756 -12.40307 -12.09869 -11.90311 -11.19880 -11.13056 -10.73951 -10.26853 -9.75494 -8.69193 -6.50503 1.22960 1.59071 1.63165 1.66021 1.86900 2.55555 2.85048 2.98784 3.35803 3.38675 3.54438 3.68314 3.84538 4.22695 4.36398 4.46792 4.51153 4.52578 4.60349 4.60498 4.66342 4.90811 4.91724 4.96096 5.07032 5.70924 6.07256 6.42541 6.53589 6.77883 6.88580 7.26426 8.63304 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.045427 B = 0.007589 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.228219 B = 3688.721313 C = 3863.835955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.103 3.897 3 C -0.167 4.167 4 F -0.207 7.207 5 C 0.503 3.497 6 O -0.574 6.574 7 N -0.625 5.625 8 C 0.120 3.880 9 C 0.197 3.803 10 O -0.578 6.578 11 C -0.632 4.632 12 H 0.065 0.935 13 C -0.002 4.002 14 N -0.915 5.915 15 Si 1.112 2.888 16 H -0.285 1.285 17 H -0.268 1.268 18 H -0.278 1.278 19 C 0.087 3.913 20 H 0.089 0.911 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.374 0.626 29 H 0.264 0.736 30 H 0.098 0.902 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 6.965 -0.468 9.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.224 4.224 4 F -0.187 7.187 5 C 0.292 3.708 6 O -0.455 6.455 7 N -0.357 5.357 8 C -0.001 4.001 9 C 0.156 3.844 10 O -0.385 6.385 11 C -0.670 4.670 12 H 0.083 0.917 13 C -0.203 4.203 14 N -0.552 5.552 15 Si 0.934 3.066 16 H -0.210 1.210 17 H -0.193 1.193 18 H -0.204 1.204 19 C -0.035 4.035 20 H 0.108 0.892 21 H 0.124 0.876 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.127 0.873 28 H 0.223 0.777 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.263 6.529 -0.134 9.048 hybrid contribution -1.169 -0.107 -0.007 1.174 sum -7.432 6.422 -0.141 9.823 Atomic orbital electron populations 1.22172 0.88962 1.04076 1.05496 1.21410 0.97948 0.93827 0.78626 1.22412 1.02557 0.91170 1.06297 1.92887 1.90635 1.83225 1.52002 1.21288 0.80858 0.79526 0.89121 1.90632 1.55101 1.53247 1.46551 1.50220 1.04298 1.56292 1.24900 1.23378 0.87346 0.96703 0.92722 1.20382 0.93426 0.81108 0.89486 1.86234 1.67641 1.38415 1.46234 1.22443 0.92132 1.53905 0.98529 0.91659 1.27147 1.08929 0.90921 0.93336 1.71014 1.23108 1.45788 1.15262 0.82982 0.70451 0.77832 0.75363 1.21004 1.19253 1.20355 1.24302 0.81059 1.01679 0.96505 0.89198 0.87615 0.92355 0.91832 0.87300 0.88812 0.91812 0.87261 0.77683 0.92493 0.88442 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 8.23 71.98 0.59 -3.10 16 2 C 0.10 3.19 1.35 -11.54 -0.02 3.18 16 3 C -0.17 -3.97 8.84 71.98 0.64 -3.33 16 4 F -0.21 -7.30 16.04 44.97 0.72 -6.58 16 5 C 0.50 20.08 7.05 87.66 0.62 20.69 16 6 O -0.57 -25.54 16.71 -3.03 -0.05 -25.59 16 7 N -0.62 -26.11 3.59 -840.07 -3.01 -29.13 16 8 C 0.12 5.22 8.22 86.48 0.71 5.94 16 9 C 0.20 9.35 1.08 -10.87 -0.01 9.34 16 10 O -0.58 -29.44 13.45 -148.98 -2.00 -31.45 16 11 C -0.63 -31.68 8.56 25.60 0.22 -31.46 16 12 H 0.07 3.20 7.85 -2.91 -0.02 3.18 16 13 C 0.00 -0.08 5.26 84.65 0.45 0.37 16 14 N -0.91 -48.08 12.80 21.45 0.27 -47.81 16 15 Si 1.11 44.74 29.93 68.60 2.05 46.80 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 19 C 0.09 3.68 5.49 86.49 0.48 4.15 16 20 H 0.09 2.06 8.04 -2.39 -0.02 2.04 16 21 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.68 6.65 -2.39 -0.02 1.67 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.11 4.28 8.09 -2.39 -0.02 4.26 16 28 H 0.37 18.78 6.95 -74.06 -0.52 18.27 16 29 H 0.26 13.70 5.53 -92.70 -0.51 13.19 16 30 H 0.10 3.90 8.01 -2.39 -0.02 3.89 16 31 H 0.07 2.90 7.25 -2.38 -0.02 2.88 16 Total: -1.00 -61.27 267.04 2.53 -58.73 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.88 Total: 29.25 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 3.67 Total: 5.77 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.74 Total: -76.93 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -2.06 Total: -57.04 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.72 Total: -6.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.05 Total: 46.80 kcal Total: -61.27 2.53 -58.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321207689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.858 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds