Wall clock time and date at job start Sun Mar 29 2020 22:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09003 * 110.28592 * 27.87168 * 3 2 1 5 5 C 1.54377 * 110.32156 * 265.63906 * 3 2 1 6 6 N 1.48561 * 104.59459 * 217.24756 * 5 3 2 7 7 C 1.46903 * 111.00290 * 159.03887 * 6 5 3 8 8 C 1.52995 * 109.47159 * 174.70826 * 7 6 5 9 9 H 1.09006 * 109.46878 * 60.00577 * 8 7 6 10 10 O 1.42897 * 109.47301 * 300.00141 * 8 7 6 11 11 C 1.50697 * 109.47108 * 180.02562 * 8 7 6 12 12 H 1.08004 * 119.99776 * 359.97438 * 11 8 7 13 13 C 1.37882 * 120.00360 * 180.02562 * 11 8 7 14 14 N 1.31508 * 119.99767 * 180.02562 * 13 11 8 15 15 Si 1.86798 * 119.99503 * 359.97438 * 13 11 8 16 16 H 1.48498 * 109.47428 * 90.00502 * 15 13 11 17 17 H 1.48500 * 109.46709 * 210.00174 * 15 13 11 18 18 H 1.48503 * 109.47450 * 329.99820 * 15 13 11 19 19 C 1.48566 * 104.21934 * 39.48610 * 6 5 3 20 20 C 1.54251 * 110.32262 * 150.00165 * 3 2 1 21 21 H 1.09001 * 110.32935 * 359.90109 * 20 3 2 22 22 O 1.42903 * 110.32490 * 237.79140 * 20 3 2 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.08999 * 110.41586 * 336.02966 * 5 3 2 27 27 H 1.09005 * 110.41510 * 98.47254 * 5 3 2 28 28 H 1.08996 * 109.47271 * 294.71386 * 7 6 5 29 29 H 1.09005 * 109.46675 * 54.70786 * 7 6 5 30 30 H 0.96695 * 114.00072 * 300.00177 * 10 8 7 31 31 H 0.97010 * 119.99429 * 180.02562 * 14 13 11 32 32 H 1.08993 * 110.41053 * 201.73800 * 19 6 5 33 33 H 1.09001 * 110.40876 * 79.29400 * 19 6 5 34 34 H 0.96696 * 113.99981 * 180.02562 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3384 2.0183 0.4780 5 6 2.3290 1.7504 -1.4435 6 7 3.6078 2.4981 -1.3311 7 6 4.2968 2.5607 -2.6270 8 6 5.5380 3.4465 -2.5024 9 1 6.2100 3.0271 -1.7536 10 8 5.1462 4.7627 -2.1071 11 6 6.2444 3.5113 -3.8320 12 1 5.8479 2.9740 -4.6808 13 6 7.3975 4.2556 -3.9645 14 7 8.0136 4.3124 -5.1250 15 14 8.0836 5.1843 -2.4961 16 1 9.0287 4.3106 -1.7555 17 1 8.7974 6.3980 -2.9677 18 1 6.9700 5.5826 -1.5980 19 6 4.3999 1.7199 -0.3441 20 6 3.3726 1.2853 0.7232 21 1 3.5972 0.2800 1.0798 22 8 3.3693 2.2086 1.8139 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 2.4519 0.8820 -2.0907 27 1 1.5409 2.4004 -1.8237 28 1 4.5955 1.5568 -2.9286 29 1 3.6247 2.9801 -3.3758 30 1 4.5464 5.1977 -2.7283 31 1 8.8250 4.8358 -5.2181 32 1 5.1711 2.3467 0.1035 33 1 4.8470 0.8466 -0.8193 34 1 4.2013 2.2393 2.3057 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351461225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:29 Heat of formation + Delta-G solvation = -159.291173 kcal Electronic energy + Delta-G solvation = -16971.849118 eV Core-core repulsion = 14097.083381 eV Total energy + Delta-G solvation = -2874.765736 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76859 -38.49845 -37.65291 -36.39253 -34.41299 -32.04092 -29.63295 -29.30180 -27.45697 -25.97523 -23.20396 -22.12088 -21.49109 -19.40660 -18.58099 -17.35084 -17.19536 -16.78247 -16.59359 -16.13284 -15.94805 -15.36950 -15.28847 -14.84687 -14.59407 -14.14081 -13.72348 -13.46037 -13.18558 -13.05038 -12.88612 -12.54895 -12.38236 -12.33995 -11.76061 -11.63521 -11.08556 -11.00411 -10.82429 -10.70539 -10.11604 -9.42524 -8.36272 -6.51336 1.39479 1.45613 1.76684 2.41627 2.44330 3.01713 3.06548 3.37726 3.53632 3.77380 4.00040 4.09534 4.22905 4.26925 4.40784 4.47758 4.52041 4.56621 4.64376 4.68399 4.82114 4.84528 4.89774 4.93310 5.38976 5.44943 5.80127 5.97933 6.08164 6.17584 6.61110 6.83973 7.21866 7.36977 8.77949 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.044866 B = 0.006494 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.924513 B = 4310.932117 C = 4674.520846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.095 3.905 4 H 0.086 0.914 5 C 0.014 3.986 6 N -0.502 5.502 7 C 0.042 3.958 8 C 0.213 3.787 9 H 0.047 0.953 10 O -0.573 6.573 11 C -0.569 4.569 12 H 0.036 0.964 13 C 0.030 3.970 14 N -0.940 5.940 15 Si 0.939 3.061 16 H -0.284 1.284 17 H -0.297 1.297 18 H -0.206 1.206 19 C 0.001 3.999 20 C 0.110 3.890 21 H 0.086 0.914 22 O -0.569 6.569 23 H 0.103 0.897 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.366 0.634 31 H 0.267 0.733 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 -6.868 13.047 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.036 3.964 4 H 0.104 0.896 5 C -0.115 4.115 6 N -0.227 5.227 7 C -0.087 4.087 8 C 0.155 3.845 9 H 0.065 0.935 10 O -0.379 6.379 11 C -0.607 4.607 12 H 0.055 0.945 13 C -0.170 4.170 14 N -0.579 5.579 15 Si 0.763 3.237 16 H -0.210 1.210 17 H -0.224 1.224 18 H -0.128 1.128 19 C -0.127 4.127 20 C 0.050 3.950 21 H 0.104 0.896 22 O -0.378 6.378 23 H 0.122 0.878 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.213 0.787 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.088 -6.462 13.427 19.833 hybrid contribution 0.989 -0.318 -0.899 1.374 sum -12.099 -6.779 12.529 18.690 Atomic orbital electron populations 1.23041 0.78927 1.04184 1.01006 1.87854 1.22021 1.26848 1.94979 1.22599 0.94766 0.85031 0.93990 0.89619 1.23608 0.93761 0.97260 0.96842 1.65401 1.03460 1.45633 1.08179 1.22721 0.96721 0.98798 0.90426 1.19423 0.90982 0.81421 0.92721 0.93484 1.86592 1.68313 1.30679 1.52304 1.21850 1.10147 1.31559 0.97145 0.94536 1.25839 0.96311 0.96226 0.98595 1.70083 1.19386 1.41890 1.26514 0.85982 0.79006 0.77732 0.80997 1.21017 1.22364 1.12786 1.23887 0.97213 0.96774 0.94868 1.22394 0.93382 0.92764 0.86446 0.89600 1.86423 1.42328 1.63932 1.45080 0.87826 0.93154 0.92965 0.93145 0.88925 0.95198 0.91073 0.78729 0.92398 0.89793 0.93055 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.85 113.37 1.23 1.62 16 2 O -0.40 -9.50 10.31 -148.98 -1.54 -11.04 16 3 C 0.09 2.41 3.35 31.49 0.11 2.52 16 4 H 0.09 2.15 7.65 -2.39 -0.02 2.13 16 5 C 0.01 0.38 6.23 86.45 0.54 0.92 16 6 N -0.50 -16.99 5.24 -881.47 -4.62 -21.61 16 7 C 0.04 1.64 4.41 86.30 0.38 2.02 16 8 C 0.21 9.83 2.31 29.85 0.07 9.90 16 9 H 0.05 2.23 6.68 -2.38 -0.02 2.21 16 10 O -0.57 -25.67 10.01 -148.98 -1.49 -27.16 16 11 C -0.57 -31.98 9.34 25.60 0.24 -31.74 16 12 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 13 C 0.03 1.74 5.47 84.66 0.46 2.21 16 14 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 15 Si 0.94 45.30 26.99 68.60 1.85 47.15 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 18 H -0.21 -9.57 5.31 99.48 0.53 -9.04 16 19 C 0.00 0.03 5.48 86.45 0.47 0.50 16 20 C 0.11 2.79 4.23 31.49 0.13 2.93 16 21 H 0.09 1.95 7.98 -2.39 -0.02 1.93 16 22 O -0.57 -14.03 13.26 -148.98 -1.98 -16.01 16 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.76 8.10 -2.38 -0.02 0.74 16 26 H 0.05 1.44 7.94 -2.39 -0.02 1.43 16 27 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.03 1.20 7.88 -2.39 -0.02 1.18 16 29 H 0.07 2.76 8.13 -2.38 -0.02 2.74 16 30 H 0.37 14.75 9.04 -74.06 -0.67 14.08 16 31 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 32 H 0.08 2.63 7.70 -2.39 -0.02 2.61 16 33 H 0.05 1.55 7.82 -2.39 -0.02 1.53 16 34 H 0.40 6.47 9.12 -74.06 -0.68 5.79 16 Total: -1.00 -69.18 279.72 -4.26 -73.44 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.42 Total: 22.51 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.63 Total: -9.12 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -4.32 Total: -79.77 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -5.00 Total: -54.20 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.85 Total: 47.15 kcal Total: -69.18 -4.26 -73.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351461225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.850 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds