Wall clock time and date at job start Sun Mar 29 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 O 1.42907 * 109.46691 * 59.99721 * 9 7 2 12 12 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 13 13 N 1.46901 * 109.46565 * 179.97438 * 12 9 7 14 14 C 1.48552 * 111.00634 * 285.41997 * 13 12 9 15 15 C 1.54381 * 104.60072 * 200.96301 * 14 13 12 16 16 H 1.09002 * 110.32040 * 264.96023 * 15 14 13 17 17 O 1.42889 * 110.41079 * 142.79158 * 15 14 13 18 18 C 1.54263 * 105.05722 * 23.85318 * 15 14 13 19 19 C 1.48570 * 110.99582 * 170.00064 * 13 12 9 20 20 H 1.08998 * 110.41058 * 40.26546 * 19 13 12 21 21 C 1.52997 * 110.41118 * 277.82187 * 19 13 12 22 22 O 1.42895 * 109.47419 * 294.99831 * 21 19 13 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 0.96700 * 114.00202 * 60.00567 * 11 9 7 25 25 H 1.08996 * 109.47332 * 299.99701 * 12 9 7 26 26 H 1.08996 * 109.46646 * 60.00565 * 12 9 7 27 27 H 1.09001 * 110.41449 * 319.74630 * 14 13 12 28 28 H 1.09000 * 110.40968 * 82.18199 * 14 13 12 29 29 H 0.96703 * 114.00127 * 64.32053 * 17 15 14 30 30 H 1.09005 * 110.32417 * 241.10912 * 18 15 14 31 31 H 1.08993 * 110.40929 * 118.93980 * 18 15 14 32 32 H 1.08996 * 109.47121 * 55.00141 * 21 19 13 33 33 H 1.09003 * 109.46843 * 174.99847 * 21 19 13 34 34 H 0.96695 * 114.00221 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5210 1.1675 12 6 4.0216 -2.6365 -0.0001 13 7 5.4906 -2.6364 -0.0001 14 6 6.0231 -2.2675 -1.3370 15 6 7.4650 -2.8190 -1.3473 16 1 8.1699 -2.0409 -1.0545 17 8 7.7955 -3.3255 -2.6419 18 6 7.4650 -3.9603 -0.3095 19 6 6.0231 -4.0024 0.2406 20 1 5.4316 -4.7416 -0.2995 21 6 6.0321 -4.3153 1.7382 22 8 6.9478 -3.4417 2.4018 23 1 -0.4850 0.8400 -0.0004 24 1 3.7018 -0.9251 1.9983 25 1 3.6580 -3.1505 0.8896 26 1 3.6587 -3.1500 -0.8904 27 1 5.4315 -2.7352 -2.1241 28 1 6.0295 -1.1843 -1.4579 29 1 7.8109 -2.6519 -3.3356 30 1 8.1700 -3.7424 0.4929 31 1 7.7160 -4.9077 -0.7863 32 1 5.0316 -4.1704 2.1457 33 1 6.3407 -5.3494 1.8914 34 1 7.0050 -3.5836 3.3566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559771916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:22 Heat of formation + Delta-G solvation = -173.434231 kcal Electronic energy + Delta-G solvation = -17210.056721 eV Core-core repulsion = 14334.677695 eV Total energy + Delta-G solvation = -2875.379025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63577 -38.07744 -37.56336 -36.22938 -34.45268 -32.60069 -30.59493 -29.72846 -26.61397 -25.52693 -22.89446 -21.56483 -21.09793 -19.43838 -18.66884 -18.05772 -16.98775 -16.72809 -16.46363 -16.22239 -15.51256 -15.25930 -14.90843 -14.82215 -14.33650 -14.15580 -13.92247 -13.62055 -13.15157 -12.93325 -12.71864 -12.43967 -12.24976 -11.90435 -11.73836 -11.61846 -11.15639 -10.94665 -10.89807 -10.74024 -10.33939 -9.35676 -8.39356 -6.54149 1.38644 1.42136 1.57252 2.36163 2.83321 2.96420 3.39440 3.44106 3.62041 3.82547 3.99165 4.10815 4.26519 4.28783 4.40047 4.49578 4.50350 4.61314 4.76221 4.82210 4.90830 4.97234 4.98858 5.26368 5.38870 5.43862 5.92274 6.05399 6.07710 6.58355 6.82074 7.07913 7.18104 7.32832 8.74755 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.007811 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.003112 B = 3583.739062 C = 3947.086216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.565 4.565 8 H 0.041 0.959 9 C 0.212 3.788 10 H 0.044 0.956 11 O -0.576 6.576 12 C 0.043 3.957 13 N -0.492 5.492 14 C -0.001 4.001 15 C 0.107 3.893 16 H 0.073 0.927 17 O -0.576 6.576 18 C -0.101 4.101 19 C 0.050 3.950 20 H 0.061 0.939 21 C 0.097 3.903 22 O -0.573 6.573 23 H 0.269 0.731 24 H 0.370 0.630 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.394 0.606 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.786 -7.824 0.991 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.168 4.168 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.604 4.604 8 H 0.060 0.940 9 C 0.153 3.847 10 H 0.062 0.938 11 O -0.383 6.383 12 C -0.086 4.086 13 N -0.216 5.216 14 C -0.130 4.130 15 C 0.048 3.952 16 H 0.091 0.909 17 O -0.384 6.384 18 C -0.139 4.139 19 C -0.058 4.058 20 H 0.079 0.921 21 C 0.019 3.981 22 O -0.380 6.380 23 H 0.078 0.922 24 H 0.217 0.783 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.244 0.756 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 16.194 -7.318 0.676 17.784 hybrid contribution -1.242 0.160 -0.123 1.258 sum 14.952 -7.158 0.553 16.586 Atomic orbital electron populations 1.70062 1.08143 1.28482 1.50813 1.25780 0.95284 1.03264 0.92500 0.85257 0.77813 0.77890 0.78633 1.20021 1.22940 1.19113 1.21866 0.92249 0.93513 1.52726 0.94037 1.19533 0.90231 0.89245 0.85650 0.93807 1.86311 1.77336 1.57958 1.16673 1.22701 0.87206 0.98466 1.00188 1.65360 1.07431 1.22500 1.26353 1.23876 0.96848 1.01188 0.91068 1.22439 0.93153 0.95969 0.83639 0.90884 1.86470 1.92530 1.40699 1.18686 1.22203 0.96117 0.98513 0.97084 1.22901 0.96089 0.90596 0.96228 0.92066 1.21948 0.92509 0.92908 0.90770 1.86514 1.64081 1.61700 1.25738 0.92217 0.78294 0.90975 0.95436 0.93700 0.91016 0.75572 0.88824 0.89909 0.94207 0.90985 0.76113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 2 C 0.03 1.87 5.47 84.65 0.46 2.33 16 3 Si 0.98 48.59 26.18 68.60 1.80 50.38 16 4 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -13.07 6.54 99.48 0.65 -12.41 16 7 C -0.57 -31.95 9.34 25.60 0.24 -31.71 16 8 H 0.04 2.54 7.99 -2.92 -0.02 2.52 16 9 C 0.21 10.03 2.36 29.85 0.07 10.10 16 10 H 0.04 2.19 6.52 -2.39 -0.02 2.18 16 11 O -0.58 -26.56 10.90 -148.98 -1.62 -28.18 16 12 C 0.04 1.70 4.38 86.30 0.38 2.08 16 13 N -0.49 -16.84 4.86 -856.72 -4.16 -21.00 16 14 C 0.00 -0.03 5.66 86.45 0.49 0.45 16 15 C 0.11 2.80 4.42 31.49 0.14 2.94 16 16 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 17 O -0.58 -13.60 13.27 -148.98 -1.98 -15.58 16 18 C -0.10 -2.54 6.25 31.49 0.20 -2.34 16 19 C 0.05 1.39 2.69 45.06 0.12 1.51 16 20 H 0.06 1.68 8.00 -2.39 -0.02 1.66 16 21 C 0.10 2.26 6.91 71.98 0.50 2.75 16 22 O -0.57 -13.76 12.33 -148.98 -1.84 -15.60 16 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 24 H 0.37 15.21 9.04 -74.06 -0.67 14.54 16 25 H 0.07 2.77 7.10 -2.39 -0.02 2.76 16 26 H 0.03 1.12 7.77 -2.39 -0.02 1.10 16 27 H 0.04 1.45 7.69 -2.39 -0.02 1.44 16 28 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 29 H 0.39 6.11 9.12 -74.06 -0.68 5.44 16 30 H 0.09 2.32 6.86 -2.38 -0.02 2.30 16 31 H 0.08 1.91 7.99 -2.39 -0.02 1.90 16 32 H 0.04 0.99 7.19 -2.39 -0.02 0.98 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.39 5.69 9.12 -74.06 -0.68 5.01 16 Total: -1.00 -70.70 276.54 -5.86 -76.56 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.95 Total: 22.96 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 2.59 Total: -11.90 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.86 Total: -78.64 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -5.44 Total: -59.36 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.80 Total: 50.38 kcal Total: -70.70 -5.86 -76.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559771916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.877 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds