Wall clock time and date at job start Sun Mar 29 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47448 * 2 1 4 4 O 1.42904 * 109.46916 * 120.00258 * 2 1 3 5 5 C 1.52999 * 109.47097 * 239.99825 * 2 1 3 6 6 H 1.09003 * 109.47064 * 299.99649 * 5 2 1 7 7 O 1.42891 * 109.47186 * 60.00084 * 5 2 1 8 8 C 1.53001 * 109.46981 * 180.02562 * 5 2 1 9 9 N 1.46903 * 109.47069 * 180.02562 * 8 5 2 10 10 C 1.47957 * 111.00079 * 169.99783 * 9 8 5 11 11 C 1.53937 * 86.18208 * 222.41605 * 10 9 8 12 12 O 1.42896 * 113.73148 * 269.25755 * 11 10 9 13 13 C 1.50694 * 113.73443 * 138.07827 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47958 * 111.00224 * 70.63461 * 9 8 5 22 22 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46976 * 300.00177 * 1 2 3 24 24 H 1.08997 * 109.46898 * 59.99902 * 1 2 3 25 25 H 0.96708 * 113.99490 * 299.99876 * 4 2 1 26 26 H 0.96702 * 113.99772 * 60.00087 * 7 5 2 27 27 H 1.08997 * 109.47366 * 60.00058 * 8 5 2 28 28 H 1.08999 * 109.46999 * 299.99348 * 8 5 2 29 29 H 1.08999 * 113.76060 * 108.09601 * 10 9 8 30 30 H 1.09001 * 113.85944 * 336.74419 * 10 9 8 31 31 H 0.96709 * 114.00030 * 178.09403 * 12 11 10 32 32 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 33 33 H 1.09003 * 113.76031 * 23.26533 * 21 9 8 34 34 H 1.08999 * 113.76380 * 251.90073 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0401 -0.7213 -1.2492 6 1 1.6768 -1.7490 -1.2491 7 8 1.5638 -0.0477 -2.4159 8 6 3.5701 -0.7218 -1.2489 9 7 4.0598 -1.4138 -2.4486 10 6 5.5191 -1.2297 -2.6084 11 6 5.2243 -1.0149 -4.1039 12 8 5.2694 -2.2156 -4.8773 13 6 6.0120 0.1116 -4.7216 14 1 6.7052 0.6798 -4.1191 15 6 5.8477 0.4169 -6.0562 16 7 5.0040 -0.2753 -6.7901 17 14 6.8235 1.8137 -6.8217 18 1 6.4677 1.9370 -8.2582 19 1 6.5033 3.0833 -6.1212 20 1 8.2758 1.5308 -6.6945 21 6 3.8052 -0.6108 -3.6650 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7210 -0.2701 1.9980 26 1 1.8492 0.8739 -2.4821 27 1 3.9330 -1.2359 -0.3589 28 1 3.9337 0.3057 -1.2488 29 1 6.1005 -2.1279 -2.4000 30 1 5.9095 -0.3446 -2.1062 31 1 5.0563 -2.0896 -5.8121 32 1 4.8882 -0.0603 -7.7288 33 1 3.6925 0.4559 -3.4714 34 1 3.0173 -1.0144 -4.3008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559779989.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:51 Heat of formation + Delta-G solvation = -117.306796 kcal Electronic energy + Delta-G solvation = -17133.748528 eV Core-core repulsion = 14260.803371 eV Total energy + Delta-G solvation = -2872.945157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.39764 -37.91328 -35.93438 -34.01044 -32.00538 -31.04106 -29.61338 -26.60017 -24.92327 -24.35706 -21.60336 -21.00538 -18.50848 -17.61156 -17.20425 -16.17159 -15.33772 -15.22848 -14.80896 -14.46956 -14.40458 -13.82261 -13.36268 -12.70653 -12.60911 -12.09264 -12.00484 -11.88178 -11.69184 -11.35135 -11.08587 -10.84863 -10.78581 -10.63016 -10.38733 -10.09134 -9.94277 -9.45942 -9.22029 -8.58479 -8.09668 -7.68421 -6.20822 -4.30824 3.22410 3.28235 3.30433 4.00721 4.27835 4.44252 4.90001 4.96230 4.98719 5.02319 5.18239 5.51037 5.57140 5.67724 5.74971 6.02950 6.09290 6.11509 6.13291 6.37070 6.45506 6.54160 6.78672 7.22105 7.31309 7.44279 7.50839 7.81212 7.85482 8.05808 8.11614 8.70099 9.38617 9.73614 10.84705 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.006577 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.112282 B = 4256.237412 C = 4429.358220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.071 3.929 3 H 0.053 0.947 4 O -0.560 6.560 5 C 0.122 3.878 6 H 0.108 0.892 7 O -0.542 6.542 8 C -0.006 4.006 9 N -0.476 5.476 10 C 0.007 3.993 11 C 0.238 3.762 12 O -0.573 6.573 13 C -0.538 4.538 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.902 3.098 18 H -0.285 1.285 19 H -0.276 1.276 20 H -0.275 1.275 21 C 0.007 3.993 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.375 0.625 26 H 0.370 0.630 27 H 0.080 0.920 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.388 0.612 32 H 0.271 0.729 33 H 0.052 0.948 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.667 3.576 11.015 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.011 3.989 3 H 0.071 0.929 4 O -0.365 6.365 5 C 0.062 3.938 6 H 0.125 0.875 7 O -0.346 6.346 8 C -0.135 4.135 9 N -0.199 5.199 10 C -0.122 4.122 11 C 0.197 3.803 12 O -0.385 6.385 13 C -0.576 4.576 14 H 0.081 0.919 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.730 3.270 18 H -0.210 1.210 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.122 4.122 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.222 0.778 26 H 0.217 0.783 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.243 0.757 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.869 1.668 10.892 12.985 hybrid contribution 0.534 2.899 -0.243 2.958 sum -6.334 4.568 10.650 13.206 Atomic orbital electron populations 1.22422 0.95954 1.03034 1.02336 1.22586 0.93613 0.95597 0.87112 0.92932 1.86538 1.76932 1.57435 1.15631 1.21721 0.93028 0.96769 0.82301 0.87458 1.86724 1.76662 1.28868 1.42392 1.23189 0.95395 0.97609 0.97328 1.68517 1.07082 1.43164 1.01114 1.24150 0.89821 0.99592 0.98634 1.19855 0.90219 0.83684 0.86567 1.86034 1.92904 1.32818 1.26710 1.21625 1.24806 1.15739 0.95453 0.91920 1.25050 0.94507 0.96563 0.96950 1.69352 1.35465 1.40786 1.08112 0.86493 0.80475 0.81964 0.78098 1.21013 1.20179 1.20016 1.24526 1.01992 0.94707 0.90948 0.91750 0.92821 0.90825 0.77813 0.78299 0.90154 0.95016 0.90875 0.92062 0.75697 0.91876 0.92944 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.39 37.16 0.35 -1.50 16 2 C 0.07 0.84 3.35 -26.73 -0.09 0.75 16 3 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.56 -6.60 12.64 -35.23 -0.45 -7.05 16 5 C 0.12 1.89 3.02 -26.73 -0.08 1.81 16 6 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 7 O -0.54 -8.74 10.41 -35.23 -0.37 -9.10 16 8 C -0.01 -0.10 4.53 -3.82 -0.02 -0.12 16 9 N -0.48 -10.42 6.26 -238.24 -1.49 -11.91 16 10 C 0.01 0.15 7.36 -2.77 -0.02 0.13 16 11 C 0.24 6.22 1.44 -90.84 -0.13 6.09 16 12 O -0.57 -16.11 13.48 -35.23 -0.47 -16.59 16 13 C -0.54 -14.60 8.62 -34.44 -0.30 -14.90 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.90 5.40 -17.82 -0.10 1.81 16 16 N -0.90 -24.46 11.09 55.43 0.61 -23.85 16 17 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.01 0.17 5.36 -2.77 -0.01 0.16 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 25 H 0.38 2.64 9.08 45.56 0.41 3.06 16 26 H 0.37 4.96 8.37 45.56 0.38 5.34 16 27 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 28 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 29 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 31 H 0.39 11.02 6.46 45.56 0.29 11.32 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 1.19 6.87 -51.93 -0.36 0.83 16 34 H 0.07 1.92 8.08 -51.93 -0.42 1.50 16 LS Contribution 279.70 15.07 4.22 4.22 Total: -1.00 -30.34 279.70 -6.31 -36.65 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -2.94 Total: 17.88 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.40 Total: -5.77 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.88 Total: -35.76 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.29 Total: -32.74 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.34 -6.31 -36.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779989.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.658 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds