Wall clock time and date at job start Sun Mar 29 2020 22:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47284 * 2 1 4 4 C 1.36932 * 119.99802 * 269.49968 * 3 2 1 5 5 H 1.07998 * 120.00188 * 325.97309 * 4 3 2 6 6 C 1.38815 * 119.99609 * 145.96591 * 4 3 2 7 7 N 1.31625 * 120.00287 * 336.72376 * 6 4 3 8 8 Si 1.86795 * 119.99983 * 156.72731 * 6 4 3 9 9 H 1.48501 * 109.47207 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47512 * 119.99862 * 8 6 4 11 11 H 1.48503 * 109.47310 * 240.00432 * 8 6 4 12 12 C 1.46504 * 119.99781 * 89.50192 * 3 2 1 13 13 C 1.50697 * 109.47079 * 90.00191 * 12 3 2 14 14 C 1.38084 * 119.54975 * 95.30032 * 13 12 3 15 15 C 1.39911 * 118.98811 * 180.26956 * 14 13 12 16 16 C 1.43208 * 120.92835 * 179.70646 * 15 14 13 17 17 N 7.68848 * 145.04679 * 17.02060 * 2 1 3 18 18 C 1.39958 * 118.14159 * 359.44206 * 15 14 13 19 19 C 1.38037 * 118.99116 * 0.27050 * 18 15 14 20 20 N 1.31842 * 119.54577 * 274.99860 * 13 12 3 21 21 H 1.09007 * 109.47001 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47104 * 300.00302 * 1 2 3 23 23 H 1.08998 * 109.46643 * 60.00186 * 1 2 3 24 24 H 1.08997 * 109.47104 * 239.99698 * 2 1 3 25 25 H 1.09007 * 109.46651 * 120.00053 * 2 1 3 26 26 H 0.96994 * 119.99957 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47317 * 329.99995 * 12 3 2 28 28 H 1.08993 * 109.46523 * 210.00032 * 12 3 2 29 29 H 1.08000 * 120.50411 * 359.97438 * 14 13 12 30 30 H 1.07997 * 120.50248 * 180.29667 * 18 15 14 31 31 H 1.07994 * 119.54681 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2564 2.0232 -1.1858 5 1 2.6231 1.4679 -2.0365 6 6 2.0262 3.3878 -1.2946 7 7 1.1830 3.9804 -0.4758 8 14 2.9130 4.3832 -2.6031 9 1 3.8003 3.4886 -3.3890 10 1 1.9165 5.0115 -3.5072 11 1 3.7278 5.4409 -1.9530 12 6 2.2522 2.0755 1.2687 13 6 3.6718 1.8399 1.7161 14 6 4.6454 2.7703 1.4105 15 6 5.9606 2.5370 1.8267 16 6 7.0041 3.4710 1.5270 17 7 7.8317 4.2119 1.2893 18 6 6.2270 1.3682 2.5489 19 6 5.1911 0.4956 2.8152 20 7 3.9661 0.7513 2.3990 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.0225 4.9339 -0.5517 27 1 1.5652 1.6936 2.0239 28 1 2.0863 3.1442 1.1339 29 1 4.3962 3.6621 0.8546 30 1 7.2277 1.1524 2.8929 31 1 5.3865 -0.4088 3.3722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653268204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:10 Heat of formation + Delta-G solvation = 67.470555 kcal Electronic energy + Delta-G solvation = -15582.411404 eV Core-core repulsion = 13057.080465 eV Total energy + Delta-G solvation = -2525.330939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18711 -38.03416 -37.52013 -33.86184 -33.58004 -32.95125 -30.41246 -27.88225 -25.85180 -25.09659 -23.69928 -21.97383 -19.73063 -18.47591 -17.46912 -16.78691 -16.69988 -15.98212 -15.71217 -15.57760 -15.21104 -14.64125 -14.17521 -14.16843 -14.11882 -13.94063 -13.44205 -13.12917 -12.89744 -12.62012 -12.38876 -12.27250 -12.02843 -11.85624 -11.47093 -10.74161 -10.62357 -10.37952 -9.86528 -8.63484 -7.86747 -5.40251 -0.30160 0.25941 1.39791 1.41812 1.47482 1.53910 1.92550 2.48258 2.64127 2.93575 3.21835 3.60517 3.85822 3.98813 4.02116 4.24421 4.53115 4.63295 4.69176 4.85936 4.94449 4.98218 5.07784 5.15244 5.22864 5.36189 5.55440 5.63942 5.76513 5.81813 6.23006 6.44939 7.14196 7.16826 7.83735 8.36503 9.11535 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.011361 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.140241 B = 2463.940875 C = 3662.030984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 N -0.586 5.586 4 C -0.258 4.258 5 H 0.054 0.946 6 C -0.023 4.023 7 N -0.907 5.907 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.290 1.290 12 C 0.187 3.813 13 C 0.127 3.873 14 C -0.123 4.123 15 C 0.005 3.995 16 C 0.280 3.720 17 N -0.445 5.445 18 C -0.122 4.122 19 C 0.104 3.896 20 N -0.480 5.480 21 H 0.066 0.934 22 H 0.035 0.965 23 H 0.027 0.973 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.254 0.746 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.179 0.821 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 -7.279 7.286 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 N -0.306 5.306 4 C -0.389 4.389 5 H 0.072 0.928 6 C -0.221 4.221 7 N -0.551 5.551 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.216 1.216 12 C 0.060 3.940 13 C -0.011 4.011 14 C -0.147 4.147 15 C -0.007 4.007 16 C -0.035 4.035 17 N -0.121 5.121 18 C -0.144 4.144 19 C -0.054 4.054 20 N -0.190 5.190 21 H 0.085 0.915 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.196 0.804 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.835 -6.578 7.073 11.833 hybrid contribution 0.495 1.388 -1.112 1.846 sum 7.330 -5.190 5.961 10.780 Atomic orbital electron populations 1.22108 0.98589 1.00152 1.00079 1.21008 0.92623 0.85550 0.99342 1.43944 1.74189 1.11254 1.01238 1.19239 1.36783 0.91675 0.91180 0.92786 1.25477 0.97878 0.99156 0.99608 1.70059 1.33556 1.10334 1.41124 0.85730 0.78773 0.79140 0.80045 1.19747 1.21708 1.21647 1.19855 0.87023 1.00748 0.86374 1.22441 0.99035 0.88634 0.91031 1.21958 0.92069 1.01144 0.99507 1.16323 0.88515 0.93841 1.01990 1.25659 0.92462 0.92669 0.92700 1.81215 1.11530 1.10051 1.09334 1.22466 1.03141 0.91790 0.97016 1.23460 0.86463 0.99588 0.95884 1.67543 1.23392 1.18768 1.09315 0.91521 0.94558 0.95354 0.94203 0.92338 0.93648 0.93553 0.89354 0.86422 0.80373 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.24 71.98 0.74 -4.95 16 2 C 0.14 5.65 6.39 86.38 0.55 6.20 16 3 N -0.59 -27.59 2.43 -706.34 -1.72 -29.31 16 4 C -0.26 -13.45 9.48 84.03 0.80 -12.65 16 5 H 0.05 2.87 7.93 -2.91 -0.02 2.85 16 6 C -0.02 -1.22 4.94 84.86 0.42 -0.80 16 7 N -0.91 -49.68 11.34 21.65 0.25 -49.44 16 8 Si 0.93 43.23 29.61 68.60 2.03 45.26 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 C 0.19 8.30 5.60 85.63 0.48 8.78 16 13 C 0.13 4.81 6.36 42.52 0.27 5.09 16 14 C -0.12 -4.44 9.47 22.64 0.21 -4.22 16 15 C 0.00 0.13 5.76 -21.21 -0.12 0.01 16 16 C 0.28 8.55 15.41 88.34 1.36 9.91 16 17 N -0.45 -15.00 18.54 19.01 0.35 -14.65 16 18 C -0.12 -2.57 9.86 22.64 0.22 -2.35 16 19 C 0.10 2.33 11.17 84.64 0.95 3.28 16 20 N -0.48 -15.44 10.25 -184.13 -1.89 -17.33 16 21 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 25 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 26 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 27 H 0.05 2.00 8.07 -2.39 -0.02 1.99 16 28 H 0.09 4.44 5.23 -2.39 -0.01 4.43 16 29 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 30 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -60.50 282.41 6.03 -54.47 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.13 Total: 2.69 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.88 Total: 8.30 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -3.01 Total: -110.72 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -60.50 6.03 -54.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653268204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.941 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds