Wall clock time and date at job start Sun Mar 29 2020 22:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48499 * 109.47300 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46908 * 300.00245 * 3 2 1 6 6 H 1.48498 * 109.46956 * 59.99516 * 3 2 1 7 7 C 1.38880 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00273 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.76206 * 99.99803 * 179.97438 * 9 7 2 11 11 N 1.32794 * 120.92359 * 359.95697 * 10 9 7 12 12 C 1.32234 * 121.48651 * 179.97438 * 11 10 9 13 13 N 1.31274 * 122.98828 * 0.04564 * 12 11 10 14 14 C 1.34096 * 120.47774 * 359.97438 * 13 12 11 15 15 C 1.40153 * 121.99978 * 180.02562 * 14 13 12 16 16 C 1.36345 * 119.58106 * 179.97438 * 15 14 13 17 17 C 1.39192 * 121.03030 * 0.02562 * 16 15 14 18 18 C 1.36435 * 120.90073 * 0.02562 * 17 16 15 19 19 C 1.39881 * 119.50598 * 359.97438 * 18 17 16 20 20 H 0.96998 * 120.00027 * 0.02562 * 1 2 3 21 21 H 1.07993 * 118.50399 * 180.02562 * 12 11 10 22 22 H 1.08001 * 120.20740 * 0.24312 * 15 14 13 23 23 H 1.08001 * 119.48346 * 179.97438 * 16 15 14 24 24 H 1.07999 * 119.55229 * 179.97438 * 17 16 15 25 25 H 1.08001 * 120.24573 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3464 0.0006 5 1 1.8900 2.3964 -1.2125 6 1 1.8900 2.3964 1.2124 7 6 2.0092 -1.2027 0.0005 8 1 3.0893 -1.2027 0.0010 9 16 1.1282 -2.7287 0.0005 10 6 2.4781 -3.8613 0.0005 11 7 3.7331 -3.4272 -0.0003 12 6 4.7544 -4.2671 0.0002 13 7 4.6070 -5.5716 0.0007 14 6 3.3823 -6.1177 0.0012 15 6 3.1880 -7.5057 0.0022 16 6 1.9204 -8.0079 0.0032 17 6 0.8140 -7.1633 0.0027 18 6 0.9674 -5.8076 0.0007 19 6 2.2546 -5.2599 -0.0004 20 1 -0.4850 0.8400 -0.0004 21 1 5.7552 -3.8615 -0.0001 22 1 4.0370 -8.1732 0.0066 23 1 1.7725 -9.0777 0.0036 24 1 -0.1795 -7.5869 0.0031 25 1 0.1015 -5.1621 -0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003490768.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:31 Heat of formation + Delta-G solvation = 51.996132 kcal Electronic energy + Delta-G solvation = -12962.221784 eV Core-core repulsion = 10645.420938 eV Total energy + Delta-G solvation = -2316.800846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35864 -36.99612 -33.24352 -32.92899 -30.83013 -29.68262 -25.96220 -24.48340 -23.46652 -21.85880 -18.64356 -17.80924 -17.32453 -16.19786 -15.13576 -14.57106 -14.47194 -14.28467 -13.72060 -13.41860 -12.91180 -12.03423 -11.79208 -11.41234 -11.32364 -11.30037 -11.12345 -10.77988 -10.31479 -10.13770 -9.44416 -9.04293 -8.78051 -8.27071 -8.21274 -7.01731 -6.69815 -4.38790 0.76242 1.35939 2.38071 2.75684 3.06413 3.12588 3.22332 3.50644 3.83349 4.66118 4.72024 4.77617 4.81661 5.04632 5.18407 5.28339 5.46705 5.61335 5.75975 6.00105 6.33129 6.39769 6.56142 6.75391 6.96578 7.21151 7.37922 7.80562 8.24351 8.82779 8.95193 10.36914 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.043629 B = 0.007640 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.627527 B = 3663.811939 C = 4295.598133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.076 3.924 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.115 0.885 9 S 0.180 5.820 10 C 0.153 3.847 11 N -0.547 5.547 12 C 0.321 3.679 13 N -0.572 5.572 14 C 0.177 3.823 15 C -0.123 4.123 16 C -0.085 4.085 17 C -0.152 4.152 18 C -0.060 4.060 19 C -0.161 4.161 20 H 0.278 0.722 21 H 0.180 0.820 22 H 0.129 0.871 23 H 0.123 0.877 24 H 0.123 0.877 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 -8.991 0.006 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.135 4.135 3 Si 0.758 3.242 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.689 4.689 8 H 0.133 0.867 9 S 0.430 5.570 10 C -0.109 4.109 11 N -0.271 5.271 12 C 0.027 3.973 13 N -0.294 5.294 14 C 0.050 3.950 15 C -0.144 4.144 16 C -0.106 4.106 17 C -0.172 4.172 18 C -0.081 4.081 19 C -0.171 4.171 20 H 0.088 0.912 21 H 0.197 0.803 22 H 0.147 0.853 23 H 0.141 0.859 24 H 0.141 0.859 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.540 -8.554 0.006 8.571 hybrid contribution 1.046 0.881 0.000 1.368 sum 1.586 -7.673 0.005 7.835 Atomic orbital electron populations 1.69900 1.06384 1.28999 1.44442 1.25256 0.95176 1.00243 0.92831 0.85845 0.80244 0.79941 0.78128 1.18648 1.20160 1.20166 1.23741 0.98182 0.89784 1.57194 0.86701 1.83354 1.01940 0.97007 1.74713 1.25118 0.98661 0.94750 0.92407 1.68793 0.98436 1.38568 1.21348 1.24665 0.98224 0.85586 0.88841 1.68766 1.23510 1.14181 1.22965 1.18808 0.88447 0.93944 0.93844 1.20559 0.97431 0.92608 1.03771 1.20849 0.92327 0.99645 0.97771 1.20748 0.98754 0.93297 1.04414 1.20936 0.95825 0.95501 0.95883 1.19102 0.95574 0.94096 1.08367 0.91206 0.80323 0.85346 0.85930 0.85927 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.98 13.22 55.49 0.73 -22.25 15 2 C 0.08 1.96 5.49 -17.47 -0.10 1.87 15 3 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 15 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.54 -14.40 9.28 30.97 0.29 -14.11 15 8 H 0.12 3.12 6.60 -52.48 -0.35 2.78 15 9 S 0.18 4.32 20.29 -107.50 -2.18 2.14 15 10 C 0.15 3.51 7.07 -15.84 -0.11 3.40 15 11 N -0.55 -12.68 8.62 -12.93 -0.11 -12.79 15 12 C 0.32 6.50 12.22 -92.22 -1.13 5.37 15 13 N -0.57 -11.58 10.45 -12.65 -0.13 -11.71 15 14 C 0.18 3.49 6.62 -84.84 -0.56 2.93 15 15 C -0.12 -1.96 10.01 -39.55 -0.40 -2.36 15 16 C -0.08 -1.15 9.95 -39.91 -0.40 -1.54 15 17 C -0.15 -2.16 9.96 -39.88 -0.40 -2.55 15 18 C -0.06 -1.04 9.45 -39.62 -0.37 -1.41 15 19 C -0.16 -3.29 5.76 -106.67 -0.61 -3.90 15 20 H 0.28 6.83 8.31 -40.82 -0.34 6.50 15 21 H 0.18 2.94 8.06 -52.49 -0.42 2.52 15 22 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 23 H 0.12 1.21 8.06 -52.49 -0.42 0.79 15 24 H 0.12 1.35 8.06 -52.49 -0.42 0.92 15 25 H 0.13 2.19 7.02 -52.49 -0.37 1.82 15 LS Contribution 243.41 15.07 3.67 3.67 Total: -1.00 -29.17 243.41 -8.37 -37.55 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -1.54 Total: 0.58 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.79 Total: -12.30 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.49 Total: -46.75 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.18 Total: 2.14 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.17 -8.37 -37.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003490768.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.545 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds