Wall clock time and date at job start Sun Mar 29 2020 22:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99876 * 2 1 4 4 C 1.50706 * 109.46880 * 269.99522 * 3 2 1 5 5 H 1.08000 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99640 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00417 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99568 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47329 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46768 * 120.00298 * 8 6 4 11 11 H 1.48498 * 109.47326 * 240.00095 * 8 6 4 12 12 C 1.37654 * 119.99740 * 179.97438 * 2 1 3 13 13 N 1.30849 * 124.95933 * 0.02562 * 12 2 1 14 14 C 1.36147 * 108.69522 * 180.02562 * 13 12 2 15 15 C 1.39544 * 133.67502 * 179.97438 * 14 13 12 16 16 C 1.37770 * 119.73418 * 179.97438 * 15 14 13 17 17 C 1.38645 * 120.38970 * 0.02562 * 16 15 14 18 18 C 1.38024 * 120.45937 * 359.97438 * 17 16 15 19 19 C 1.38537 * 119.89918 * 359.97438 * 18 17 16 20 20 O 1.34456 * 124.95719 * 180.02562 * 12 2 1 21 21 H 1.09004 * 109.47138 * 270.00439 * 1 2 3 22 22 H 1.09006 * 109.46718 * 29.99884 * 1 2 3 23 23 H 1.08991 * 109.47109 * 150.00239 * 1 2 3 24 24 H 1.08997 * 109.47398 * 29.99507 * 3 2 1 25 25 H 1.09002 * 109.47195 * 150.00018 * 3 2 1 26 26 H 0.97000 * 119.99922 * 179.97438 * 7 6 4 27 27 H 1.08006 * 120.13303 * 359.97438 * 15 14 13 28 28 H 1.08005 * 119.80752 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.76629 * 179.72268 * 17 16 15 30 30 H 1.08004 * 120.05336 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0975 1.0960 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5551 3.6171 -0.6732 8 14 3.4390 3.4161 -3.4340 9 1 2.8610 2.4162 -4.3674 10 1 2.8020 4.7370 -3.6678 11 1 4.9017 3.5238 -3.6670 12 6 2.1533 -1.1921 0.0005 13 7 1.5994 -2.3776 0.0006 14 6 2.5830 -3.3189 0.0018 15 6 2.5815 -4.7143 0.0028 16 6 3.7770 -5.3990 0.0033 17 6 4.9800 -4.7097 0.0034 18 6 4.9956 -3.3295 0.0024 19 6 3.8025 -2.6254 0.0008 20 8 3.4928 -1.3084 0.0011 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8901 -0.5139 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6084 2.0284 0.5137 25 1 3.1500 1.1384 0.5138 26 1 4.0326 4.4426 -0.8506 27 1 1.6468 -5.2555 0.0031 28 1 3.7772 -6.4790 0.0045 29 1 5.9113 -5.2565 0.0084 30 1 5.9365 -2.7992 0.0029 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038074654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:21 Heat of formation + Delta-G solvation = 47.907046 kcal Electronic energy + Delta-G solvation = -15581.052856 eV Core-core repulsion = 12957.154918 eV Total energy + Delta-G solvation = -2623.897939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.47682 -37.71057 -36.24861 -33.89496 -32.68632 -30.26438 -28.96202 -27.95139 -25.75314 -23.28550 -22.53962 -21.44654 -20.44854 -17.51639 -16.94163 -16.76803 -16.09532 -15.98456 -14.81635 -14.36761 -13.95827 -13.64367 -13.53561 -13.08878 -12.29546 -12.05822 -11.94565 -11.81241 -11.44070 -11.13859 -10.99435 -10.92643 -10.78295 -10.26068 -9.88590 -9.71404 -8.85161 -8.63290 -8.37282 -6.98878 -6.21540 -4.31340 1.30276 1.63518 2.61219 3.17694 3.19840 3.28059 3.33241 3.86762 4.09010 4.30201 4.89688 5.05772 5.10765 5.28082 5.51128 5.55520 5.71711 5.81753 5.94858 6.12463 6.23381 6.35652 6.50563 6.65757 6.70458 6.85514 7.03923 7.07761 7.43662 7.72350 7.95133 7.96131 8.48378 8.76491 9.36022 10.83786 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.006980 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.653644 B = 4010.459722 C = 4490.814542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.551 5.551 3 C 0.246 3.754 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.530 3.470 13 N -0.578 5.578 14 C 0.078 3.922 15 C -0.099 4.099 16 C -0.113 4.113 17 C -0.135 4.135 18 C -0.076 4.076 19 C -0.021 4.021 20 O -0.221 6.221 21 H 0.049 0.951 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.266 0.734 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -11.920 1.881 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.272 5.272 3 C 0.127 3.873 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.230 3.770 13 N -0.323 5.323 14 C -0.036 4.036 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.095 4.095 19 C -0.072 4.072 20 O -0.112 6.112 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.164 -11.599 1.933 11.816 hybrid contribution 1.016 0.751 -0.968 1.592 sum -0.149 -10.848 0.965 10.891 Atomic orbital electron populations 1.21609 0.76824 1.03347 1.01151 1.46285 1.05664 1.01170 1.74118 1.19585 0.92207 0.77349 0.98151 1.21517 1.37408 1.07034 0.92042 0.91931 1.24945 0.94939 0.96059 0.97855 1.69930 1.37740 1.14347 1.30911 0.86386 0.78177 0.78551 0.84061 1.19630 1.20655 1.20698 1.21709 0.77237 0.88790 0.89241 1.71098 1.29223 0.95669 1.36303 1.19783 0.88431 0.94872 1.00498 1.20072 0.98595 0.89820 1.03464 1.20850 0.91746 0.99562 1.01098 1.20705 0.98261 0.92293 1.04193 1.19780 0.94323 0.93174 1.02206 1.20083 0.97347 0.80837 1.08934 1.84554 1.24189 1.25310 1.77196 0.93264 0.90125 0.90997 0.93369 0.94257 0.92417 0.85580 0.85568 0.85233 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.97 10.55 59.85 0.63 2.60 16 2 N -0.55 -12.14 2.94 -185.45 -0.54 -12.69 16 3 C 0.25 6.15 5.30 -5.19 -0.03 6.12 16 4 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.53 12.01 8.37 -87.65 -0.73 11.27 16 13 N -0.58 -12.35 10.58 -12.13 -0.13 -12.48 16 14 C 0.08 1.53 7.23 -84.70 -0.61 0.92 16 15 C -0.10 -1.53 10.10 -39.27 -0.40 -1.92 16 16 C -0.11 -1.44 10.02 -39.60 -0.40 -1.84 16 17 C -0.14 -1.74 10.03 -39.51 -0.40 -2.14 16 18 C -0.08 -1.21 10.06 -39.55 -0.40 -1.60 16 19 C -0.02 -0.41 7.42 -38.70 -0.29 -0.70 16 20 O -0.22 -5.13 10.13 2.47 0.03 -5.10 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 23 H 0.07 1.21 7.60 -51.93 -0.39 0.82 16 24 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 25 H 0.04 1.06 7.66 -51.93 -0.40 0.67 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 269.61 15.07 4.06 4.06 Total: -1.00 -30.45 269.61 -7.20 -37.64 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -3.29 Total: -2.35 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.04 Total: -0.68 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.06 Total: -49.68 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.03 Total: -5.10 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.45 -7.20 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038074654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.551 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds