Wall clock time and date at job start Sun Mar 29 2020 22:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38495 * 119.90663 * 2 1 4 4 C 1.38461 * 120.36460 * 179.72376 * 3 2 1 5 5 C 1.37847 * 120.18535 * 0.55222 * 4 3 2 6 6 C 1.39993 * 119.81012 * 359.72267 * 5 4 3 7 7 C 1.47048 * 120.17911 * 180.02562 * 6 5 4 8 8 N 1.30444 * 120.00111 * 359.97438 * 7 6 5 9 9 N 1.40099 * 120.00283 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00622 * 180.02562 * 9 8 7 11 11 O 1.21925 * 119.99299 * 0.02562 * 10 9 8 12 12 C 1.41044 * 120.00574 * 180.02562 * 10 9 8 13 13 H 1.08000 * 120.00032 * 359.97438 * 12 10 9 14 14 C 1.40229 * 120.00319 * 179.97438 * 12 10 9 15 15 N 1.30588 * 119.99855 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00022 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47128 * 60.00262 * 16 14 12 18 18 H 1.48500 * 109.47093 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47270 * 300.00167 * 16 14 12 20 20 C 1.37805 * 119.90507 * 180.27761 * 2 1 3 21 21 H 1.09002 * 109.47152 * 269.72472 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72573 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72554 * 1 2 3 24 24 H 1.08001 * 119.81821 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.90443 * 180.25584 * 4 3 2 26 26 H 1.07999 * 120.09295 * 179.70570 * 5 4 3 27 27 H 1.08000 * 119.99648 * 179.97438 * 7 6 5 28 28 H 0.96999 * 119.99599 * 0.02562 * 9 8 7 29 29 H 0.97002 * 119.99948 * 179.97438 * 15 14 12 30 30 H 1.07994 * 120.09593 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2005 0.0000 4 6 3.5821 1.2116 0.0058 5 6 4.2847 0.0257 0.0001 6 6 3.5944 -1.1922 -0.0057 7 6 4.3358 -2.4621 -0.0112 8 7 5.6402 -2.4559 -0.0113 9 7 6.3466 -3.6657 -0.0160 10 6 7.6943 -3.6594 -0.0155 11 8 8.2988 -2.6005 -0.0105 12 6 8.4054 -4.8774 -0.0208 13 1 7.8700 -5.8153 -0.0249 14 6 9.8077 -4.8707 -0.0209 15 7 10.4552 -3.7366 -0.0155 16 14 10.7494 -6.4839 -0.0272 17 1 10.3944 -7.2595 -1.2427 18 1 12.2081 -6.2055 -0.0256 19 1 10.3945 -7.2690 1.1822 20 6 2.1941 -1.1946 -0.0058 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5096 24 1 1.6531 2.1332 -0.0004 25 1 4.1130 2.1521 0.0099 26 1 5.3647 0.0361 -0.0002 27 1 3.8002 -3.4000 -0.0153 28 1 5.8656 -4.5081 -0.0196 29 1 11.4252 -3.7320 -0.0152 30 1 1.6541 -2.1298 -0.0107 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059140334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:17 Heat of formation + Delta-G solvation = -7.048014 kcal Electronic energy + Delta-G solvation = -14666.418552 eV Core-core repulsion = 12040.137583 eV Total energy + Delta-G solvation = -2626.280969 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23042 -39.54416 -37.05433 -34.79213 -33.96236 -32.89311 -31.08278 -28.59627 -27.57132 -24.85668 -22.89279 -22.23098 -20.88041 -19.35953 -17.84119 -17.67166 -17.28759 -16.15496 -15.75294 -15.61385 -15.25487 -14.69501 -14.56825 -14.26851 -13.93582 -13.49272 -13.31917 -12.92723 -12.81827 -12.76972 -12.44124 -12.12263 -12.07023 -11.93212 -11.02535 -11.00930 -10.27609 -10.03069 -9.60743 -8.94287 -8.44574 -7.12158 -0.04398 0.51826 1.38129 1.38831 1.55679 1.57797 2.03386 2.32925 2.40388 2.97919 3.60882 3.75557 3.95215 4.04717 4.30335 4.41927 4.50792 4.67757 4.72546 4.96141 4.97439 5.09833 5.15735 5.18114 5.38843 5.59946 5.68643 5.70036 5.77463 5.99371 6.12325 6.65248 6.90608 7.41121 8.38893 8.55293 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.071869 B = 0.004278 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.504161 B = 6542.865414 C = 6917.224911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.054 4.054 7 C 0.063 3.937 8 N -0.263 5.263 9 N -0.595 5.595 10 C 0.542 3.458 11 O -0.616 6.616 12 C -0.563 4.563 13 H 0.097 0.903 14 C 0.029 3.971 15 N -0.802 5.802 16 Si 1.013 2.987 17 H -0.250 1.250 18 H -0.271 1.271 19 H -0.250 1.250 20 C -0.097 4.097 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.141 0.859 28 H 0.385 0.615 29 H 0.282 0.718 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 2.243 0.013 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.056 4.056 7 C -0.146 4.146 8 N -0.070 5.070 9 N -0.341 5.341 10 C 0.352 3.648 11 O -0.502 6.502 12 C -0.599 4.599 13 H 0.115 0.885 14 C -0.190 4.190 15 N -0.430 5.430 16 Si 0.830 3.170 17 H -0.174 1.174 18 H -0.195 1.195 19 H -0.174 1.174 20 C -0.117 4.117 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.169 0.831 25 H 0.154 0.846 26 H 0.114 0.886 27 H 0.158 0.842 28 H 0.223 0.777 29 H 0.092 0.908 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.074 3.496 0.017 17.429 hybrid contribution 0.168 -1.385 0.003 1.395 sum -16.906 2.111 0.020 17.038 Atomic orbital electron populations 1.20831 0.88327 1.04005 1.03343 1.20212 0.97893 0.92277 0.98939 1.21528 0.93375 0.98989 0.99253 1.21295 0.95266 0.97548 1.00276 1.21464 0.99646 0.93280 0.99868 1.18663 0.93673 0.90379 1.02865 1.24704 0.90256 0.98567 1.01105 1.74828 1.10224 1.12372 1.09582 1.47334 1.07033 1.02501 1.77184 1.17335 0.78420 0.91221 0.77820 1.90640 1.67529 1.35151 1.56855 1.20375 0.92809 0.92867 1.53811 0.88505 1.27202 0.98606 1.02428 0.90755 1.70171 1.09603 1.30383 1.32847 0.84859 0.76255 0.75239 0.80646 1.17376 1.19509 1.17391 1.21379 0.91005 0.99722 0.99601 0.90103 0.90450 0.90198 0.83086 0.84616 0.88574 0.84192 0.77746 0.90767 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.09 -1.82 5.87 -19.90 -0.12 -1.93 16 3 C -0.11 -2.31 9.70 22.38 0.22 -2.09 16 4 C -0.13 -3.32 10.03 22.23 0.22 -3.10 16 5 C -0.12 -4.20 9.59 22.60 0.22 -3.98 16 6 C -0.05 -1.71 5.88 -20.11 -0.12 -1.82 16 7 C 0.06 2.29 10.76 87.21 0.94 3.23 16 8 N -0.26 -12.75 10.19 -52.15 -0.53 -13.28 16 9 N -0.59 -30.32 6.26 -180.31 -1.13 -31.45 16 10 C 0.54 33.73 7.67 84.93 0.65 34.38 16 11 O -0.62 -44.60 15.21 -5.07 -0.08 -44.68 16 12 C -0.56 -32.24 9.28 23.44 0.22 -32.03 16 13 H 0.10 4.81 7.85 -2.91 -0.02 4.79 16 14 C 0.03 1.59 5.50 85.36 0.47 2.05 16 15 N -0.80 -49.37 11.71 21.87 0.26 -49.11 16 16 Si 1.01 39.83 29.56 68.60 2.03 41.86 16 17 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 20 C -0.10 -2.23 9.45 22.60 0.21 -2.01 16 21 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 23 H 0.08 0.72 8.08 -2.38 -0.02 0.70 16 24 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 25 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 26 H 0.10 4.02 7.55 -2.91 -0.02 4.00 16 27 H 0.14 3.90 8.03 -2.91 -0.02 3.87 16 28 H 0.38 16.11 8.61 -213.32 -1.84 14.27 16 29 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -82.91 276.78 3.49 -79.42 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.68 Total: 25.09 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.62 Total: -7.85 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -1.40 Total: -93.84 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.08 Total: -44.68 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -82.91 3.49 -79.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059140334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.372 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds