Wall clock time and date at job start Sun Mar 29 2020 22:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86800 * 120.00287 * 2 1 4 4 H 1.48501 * 109.47392 * 240.00275 * 3 2 1 5 5 H 1.48510 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47206 * 119.99919 * 3 2 1 7 7 C 1.38905 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00733 * 169.83466 * 7 2 1 9 9 N 1.37345 * 119.99806 * 349.83589 * 7 2 1 10 10 C 1.35478 * 127.83285 * 317.26617 * 9 7 2 11 11 O 1.21584 * 126.86731 * 359.97438 * 10 9 7 12 12 O 1.34284 * 106.26777 * 179.97438 * 10 9 7 13 13 N 1.21006 * 110.92389 * 0.02562 * 12 10 9 14 14 C 1.29963 * 111.55053 * 0.02562 * 13 12 10 15 15 C 1.48055 * 126.53531 * 180.02562 * 14 13 12 16 16 C 1.39475 * 120.13256 * 171.92652 * 15 14 13 17 17 C 1.37985 * 119.86263 * 179.76133 * 16 15 14 18 18 C 1.38350 * 120.13226 * 0.49451 * 17 16 15 19 19 C 1.38342 * 120.27215 * 359.78123 * 18 17 16 20 20 C 1.37983 * 120.13300 * 359.95858 * 19 18 17 21 21 H 0.97003 * 120.00184 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.06714 * 0.02562 * 16 15 14 23 23 H 1.07994 * 119.93319 * 180.27392 * 17 16 15 24 24 H 1.07993 * 119.86028 * 179.76263 * 18 17 16 25 25 H 1.07997 * 119.93175 * 179.97438 * 19 18 17 26 26 H 1.08003 * 120.06736 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6963 1.2125 7 6 2.0083 -1.2029 -0.0005 8 1 3.0756 -1.2103 -0.1656 9 7 1.3378 -2.3831 0.2088 10 6 0.3677 -2.6374 1.1198 11 8 -0.0938 -1.8579 1.9307 12 8 0.0179 -3.9224 0.9480 13 7 0.6628 -4.4308 0.0592 14 6 1.5010 -3.5872 -0.4650 15 6 2.4478 -3.8572 -1.5708 16 6 3.1706 -2.8115 -2.1447 17 6 4.0551 -3.0702 -3.1717 18 6 4.2181 -4.3621 -3.6391 19 6 3.4997 -5.4026 -3.0778 20 6 2.6162 -5.1573 -2.0467 21 1 -0.4850 0.8401 -0.0004 22 1 3.0415 -1.8021 -1.7831 23 1 4.6187 -2.2620 -3.6139 24 1 4.9087 -4.5590 -4.4457 25 1 3.6309 -6.4089 -3.4472 26 1 2.0562 -5.9705 -1.6089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065722939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:26 Heat of formation + Delta-G solvation = 26.106760 kcal Electronic energy + Delta-G solvation = -15779.453364 eV Core-core repulsion = 13018.776999 eV Total energy + Delta-G solvation = -2760.676365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.75286 -40.01463 -39.04329 -37.38467 -34.67811 -32.90837 -31.80899 -30.98905 -28.41876 -25.32304 -24.49263 -23.18504 -22.12048 -20.25263 -19.04246 -18.53500 -17.79308 -17.02855 -16.66199 -16.29429 -15.76757 -15.42403 -14.58993 -14.56833 -14.29455 -14.21149 -13.86042 -13.40106 -13.29029 -12.90389 -12.40643 -12.16766 -12.05582 -11.82621 -11.26560 -10.99495 -10.06026 -9.80511 -9.30050 -8.65834 -6.65223 -0.12598 0.55748 1.27552 1.29631 1.42878 1.51175 1.61297 1.79016 2.27550 2.71941 2.80970 3.00094 3.40731 4.06381 4.21827 4.22893 4.43100 4.61808 4.70842 4.78177 5.04921 5.12476 5.24929 5.56527 5.64566 5.70303 5.94926 6.11462 6.34259 6.72106 7.34113 7.48964 8.43239 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.011510 C = 0.007975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.289764 B = 2432.001150 C = 3510.153368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.007 3.993 3 Si 1.012 2.988 4 H -0.232 1.232 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.367 4.367 8 H 0.136 0.864 9 N -0.371 5.371 10 C 0.506 3.494 11 O -0.532 6.532 12 O -0.040 6.040 13 N -0.393 5.393 14 C 0.239 3.761 15 C -0.046 4.046 16 C -0.108 4.108 17 C -0.124 4.124 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.091 4.091 21 H 0.281 0.719 22 H 0.139 0.861 23 H 0.154 0.846 24 H 0.165 0.835 25 H 0.161 0.839 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -4.686 -10.073 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.202 4.202 3 Si 0.831 3.169 4 H -0.155 1.155 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.154 0.846 9 N -0.092 5.092 10 C 0.259 3.741 11 O -0.416 6.416 12 O -0.078 6.078 13 N -0.139 5.139 14 C -0.025 4.025 15 C -0.048 4.048 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.111 4.111 21 H 0.091 0.909 22 H 0.157 0.843 23 H 0.172 0.828 24 H 0.182 0.818 25 H 0.179 0.821 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.444 -5.124 -9.582 15.071 hybrid contribution -0.496 1.482 0.762 1.739 sum 9.948 -3.642 -8.820 13.785 Atomic orbital electron populations 1.70013 1.08922 1.30414 1.40311 1.26907 0.96201 1.04688 0.92445 0.84752 0.77754 0.73658 0.80753 1.15502 1.20608 1.18786 1.19888 0.93571 0.79716 1.55954 0.84645 1.42485 1.31547 1.10415 1.24777 1.20914 0.85693 0.82578 0.84911 1.90873 1.62007 1.48286 1.40483 1.85270 1.53266 1.24232 1.45061 1.73931 1.10968 1.21632 1.07321 1.23615 0.97600 0.84961 0.96337 1.17653 0.96932 0.96228 0.93986 1.22035 0.94778 0.99862 0.96123 1.21453 0.97972 0.98773 0.95944 1.21778 0.98335 0.91877 0.99258 1.21420 0.95707 1.01351 0.95415 1.21327 0.98442 0.94194 0.97150 0.90920 0.84324 0.82806 0.81780 0.82108 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.58 11.71 21.65 0.25 -50.33 15 2 C 0.01 0.36 5.18 84.92 0.44 0.80 15 3 Si 1.01 38.90 29.56 68.60 2.03 40.93 15 4 H -0.23 -7.64 7.11 99.48 0.71 -6.93 15 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 15 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 7 C -0.37 -18.97 7.83 83.99 0.66 -18.31 15 8 H 0.14 6.15 6.45 -2.91 -0.02 6.13 15 9 N -0.37 -20.32 2.83 -588.45 -1.67 -21.99 15 10 C 0.51 30.18 8.55 129.69 1.11 31.29 15 11 O -0.53 -34.81 16.42 19.12 0.31 -34.49 15 12 O -0.04 -2.15 11.25 92.31 1.04 -1.11 15 13 N -0.39 -19.37 11.74 -53.83 -0.63 -20.00 15 14 C 0.24 11.48 7.76 136.19 1.06 12.53 15 15 C -0.05 -1.75 5.87 -20.08 -0.12 -1.87 15 16 C -0.11 -3.67 9.26 22.51 0.21 -3.46 15 17 C -0.12 -2.96 10.03 22.24 0.22 -2.73 15 18 C -0.09 -1.80 10.04 22.32 0.22 -1.57 15 19 C -0.12 -2.60 10.03 22.23 0.22 -2.37 15 20 C -0.09 -2.76 9.70 22.51 0.22 -2.54 15 21 H 0.28 15.39 8.31 -92.71 -0.77 14.62 15 22 H 0.14 5.23 4.58 -2.91 -0.01 5.22 15 23 H 0.15 2.72 8.06 -2.91 -0.02 2.70 15 24 H 0.16 1.78 8.06 -2.91 -0.02 1.75 15 25 H 0.16 2.25 8.06 -2.91 -0.02 2.23 15 26 H 0.13 3.82 7.89 -2.91 -0.02 3.80 15 Total: -1.00 -71.93 240.49 6.80 -65.13 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.23 Total: 10.11 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.24 Total: 11.76 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -2.04 Total: -92.32 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: 1.35 Total: -35.61 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -71.93 6.80 -65.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065722939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.234 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds