Wall clock time and date at job start Sun Mar 29 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 119.99578 * 2 1 4 4 N 1.46501 * 109.47032 * 125.00500 * 3 2 1 5 5 C 1.36931 * 120.00108 * 274.87458 * 4 3 2 6 6 H 1.07998 * 120.00424 * 146.43967 * 5 4 3 7 7 C 1.38818 * 119.99946 * 326.43790 * 5 4 3 8 8 N 1.31619 * 120.00132 * 335.08781 * 7 5 4 9 9 Si 1.86800 * 120.00028 * 155.08032 * 7 5 4 10 10 H 1.48502 * 109.46932 * 60.00375 * 9 7 5 11 11 H 1.48497 * 109.47170 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47261 * 300.00387 * 9 7 5 13 13 C 1.46501 * 119.99979 * 94.87331 * 4 3 2 14 14 C 1.52999 * 109.47232 * 269.99944 * 13 4 3 15 15 C 1.50694 * 109.47474 * 180.02562 * 14 13 4 16 16 C 1.38232 * 120.00383 * 89.99956 * 15 14 13 17 17 C 1.38234 * 120.00275 * 179.97438 * 16 15 14 18 18 C 1.38228 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.38237 * 119.99627 * 0.28053 * 18 17 16 20 20 C 1.38237 * 120.00265 * 359.51061 * 19 18 17 21 21 H 1.08002 * 120.00253 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.00493 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.99955 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.47688 * 5.00177 * 3 2 1 25 25 H 1.09006 * 109.47074 * 245.00313 * 3 2 1 26 26 H 0.96998 * 120.00202 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46935 * 150.00070 * 13 4 3 28 28 H 1.09004 * 109.47143 * 30.00196 * 13 4 3 29 29 H 1.09001 * 109.47058 * 60.00200 * 14 13 4 30 30 H 1.09004 * 109.47262 * 300.00179 * 14 13 4 31 31 H 1.08004 * 119.99769 * 359.97438 * 16 15 14 32 32 H 1.08004 * 119.99580 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00299 * 180.02562 * 18 17 16 34 34 H 1.08008 * 119.99829 * 179.72461 * 19 18 17 35 35 H 1.07994 * 120.00397 * 180.27745 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5595 1.7363 2.3654 6 1 2.9761 1.2915 3.2570 7 6 1.5839 2.7182 2.4705 8 7 1.4213 3.5911 1.4989 9 14 0.5014 2.8005 3.9907 10 1 1.3498 3.0078 5.1917 11 1 -0.4537 3.9297 3.8578 12 1 -0.2526 1.5289 4.1309 13 6 4.3886 0.9259 0.9424 14 6 4.5217 -0.5765 1.1988 15 6 5.9567 -0.9941 1.0051 16 6 6.8341 -0.9688 2.0729 17 6 8.1503 -1.3523 1.8953 18 6 8.5889 -1.7616 0.6500 19 6 7.7128 -1.7819 -0.4190 20 6 6.3955 -1.4025 -0.2405 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3585 2.1317 0.0896 25 1 2.6212 1.4027 -0.9315 26 1 0.7393 4.2770 1.5722 27 1 5.0235 1.4713 1.6408 28 1 4.6968 1.1490 -0.0791 29 1 3.8869 -1.1219 0.5005 30 1 4.2136 -0.7996 2.2203 31 1 6.4913 -0.6494 3.0460 32 1 8.8358 -1.3321 2.7297 33 1 9.6171 -2.0616 0.5114 34 1 8.0566 -2.0974 -1.3931 35 1 5.7100 -1.4226 -1.0747 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065959649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:56 Heat of formation + Delta-G solvation = 56.958737 kcal Electronic energy + Delta-G solvation = -15575.905790 eV Core-core repulsion = 13153.659367 eV Total energy + Delta-G solvation = -2422.246422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -39.02495 -36.29150 -33.23735 -32.28018 -30.73803 -30.66303 -27.58936 -25.51967 -23.79511 -22.32381 -21.28360 -20.11876 -18.85340 -16.79952 -16.49445 -15.07020 -14.93225 -14.64880 -14.21731 -13.75649 -13.33861 -13.18727 -12.89701 -12.53476 -12.36308 -12.17117 -11.52176 -11.16677 -10.95366 -10.86346 -10.68615 -10.46702 -10.39264 -10.04199 -9.88909 -9.73634 -8.71241 -8.62238 -8.40541 -8.29579 -6.62092 -5.77483 -3.31745 1.60982 1.61463 3.24411 3.39292 3.44677 3.48420 4.02451 4.51124 5.09384 5.10374 5.19529 5.32139 5.35587 5.68532 5.70398 5.79176 5.91157 6.03042 6.15213 6.24272 6.26315 6.34567 6.49430 6.66541 6.68875 6.70303 6.71616 6.81784 7.03855 7.08370 7.26194 7.49076 7.60551 7.82505 7.91059 8.49863 9.18382 9.82991 10.38122 11.21632 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.030830 B = 0.006410 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.991989 B = 4366.834122 C = 4890.072116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.138 4.138 3 C 0.155 3.845 4 N -0.578 5.578 5 C -0.259 4.259 6 H 0.061 0.939 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.156 3.844 14 C -0.105 4.105 15 C -0.062 4.062 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.121 4.121 20 C -0.122 4.122 21 H 0.076 0.924 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.104 0.896 25 H 0.033 0.967 26 H 0.255 0.745 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -8.921 -2.899 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.158 4.158 3 C 0.030 3.970 4 N -0.297 5.297 5 C -0.388 4.388 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.029 3.971 14 C -0.145 4.145 15 C -0.062 4.062 16 C -0.138 4.138 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.140 4.140 21 H 0.095 0.905 22 H 0.109 0.891 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.417 -8.713 -2.909 12.458 hybrid contribution -0.627 -0.133 0.838 1.055 sum 7.789 -8.846 -2.071 11.967 Atomic orbital electron populations 1.23549 0.96302 1.00166 1.05738 1.23955 0.96127 1.00370 0.95395 1.20315 0.93991 0.94413 0.88321 1.43785 1.03295 1.75051 1.07575 1.18956 1.20482 1.14996 0.84386 0.92116 1.25011 1.01767 0.94615 0.97332 1.69989 1.33908 1.14952 1.33968 0.86508 0.80855 0.77208 0.83150 1.20762 1.21618 1.20873 1.20816 0.87415 0.90495 0.98386 1.21448 0.89938 1.00685 1.02467 1.20216 0.96976 0.95995 0.93044 1.21130 0.93384 1.00222 0.99064 1.21100 0.95912 0.99678 0.97152 1.21022 0.99302 1.01988 0.93370 1.21086 0.93854 1.00467 0.98525 1.21087 0.95805 1.00091 0.97066 0.90529 0.89132 0.89693 0.87824 0.94910 0.93505 0.93232 0.94711 0.91805 0.91270 0.86113 0.86577 0.86759 0.86625 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.36 14.32 29.01 0.42 -3.94 16 2 C -0.14 -2.89 9.81 -36.03 -0.35 -3.24 16 3 C 0.16 3.66 5.81 -5.20 -0.03 3.63 16 4 N -0.58 -14.24 2.45 -174.61 -0.43 -14.67 16 5 C -0.26 -7.03 9.44 -15.06 -0.14 -7.17 16 6 H 0.06 1.64 7.94 -52.49 -0.42 1.23 16 7 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 8 N -0.89 -25.35 11.36 55.49 0.63 -24.72 16 9 Si 0.89 21.67 29.62 -169.99 -5.04 16.64 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.16 3.27 5.69 -4.04 -0.02 3.24 16 14 C -0.11 -1.89 5.67 -27.89 -0.16 -2.05 16 15 C -0.06 -0.97 5.13 -104.63 -0.54 -1.51 16 16 C -0.12 -1.78 9.70 -39.59 -0.38 -2.16 16 17 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 18 C -0.14 -1.70 10.05 -39.59 -0.40 -2.09 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.76 9.70 -39.58 -0.38 -2.14 16 21 H 0.08 1.33 8.06 -52.49 -0.42 0.91 16 22 H 0.09 1.88 7.84 -52.49 -0.41 1.46 16 23 H 0.09 1.66 6.95 -52.49 -0.36 1.29 16 24 H 0.10 2.76 5.01 -51.93 -0.26 2.50 16 25 H 0.03 0.73 7.84 -51.93 -0.41 0.32 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 28 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 29 H 0.06 1.13 6.97 -51.93 -0.36 0.77 16 30 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 31 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -28.66 298.30 -8.35 -37.01 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.14 Total: 2.31 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.88 Total: -21.06 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.20 Total: -39.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.04 Total: 16.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.66 -8.35 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065959649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.973 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds