Wall clock time and date at job start Sun Mar 29 2020 22:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86794 * 119.99990 * 2 1 4 4 H 1.48502 * 109.47216 * 239.99724 * 3 2 1 5 5 H 1.48501 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47340 * 119.99694 * 3 2 1 7 7 C 1.38791 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00217 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.76198 * 99.99758 * 179.97438 * 9 7 2 11 11 N 1.32335 * 120.63413 * 359.97245 * 10 9 7 12 12 N 1.28094 * 123.20613 * 180.02562 * 11 10 9 13 13 C 1.31449 * 123.51011 * 359.38767 * 12 11 10 14 14 C 1.40697 * 119.12174 * 0.91298 * 13 12 11 15 15 C 1.40090 * 122.72641 * 179.09516 * 14 13 12 16 16 C 1.36353 * 119.38070 * 180.02562 * 15 14 13 17 17 C 1.39262 * 121.05473 * 359.97438 * 16 15 14 18 18 C 1.36453 * 121.05128 * 0.02562 * 17 16 15 19 19 C 1.39786 * 119.40891 * 0.26092 * 18 17 16 20 20 H 0.97003 * 120.00470 * 0.02562 * 1 2 3 21 21 H 1.07996 * 120.43453 * 180.02562 * 13 12 11 22 22 H 1.08000 * 120.31183 * 0.03595 * 15 14 13 23 23 H 1.07998 * 119.47490 * 179.97438 * 16 15 14 24 24 H 1.07999 * 119.48050 * 179.97438 * 17 16 15 25 25 H 1.08002 * 120.29176 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0094 -1.2020 0.0005 8 1 3.0894 -1.2020 0.0010 9 16 1.1284 -2.7279 0.0005 10 6 2.4782 -3.8605 0.0005 11 7 3.7267 -3.4216 0.0000 12 7 4.7439 -4.2001 -0.0005 13 6 4.6542 -5.5114 0.0112 14 6 3.3813 -6.1107 0.0055 15 6 3.1981 -7.4996 -0.0015 16 6 1.9327 -8.0074 -0.0073 17 6 0.8216 -7.1678 -0.0058 18 6 0.9649 -5.8108 0.0010 19 6 2.2480 -5.2561 0.0010 20 1 -0.4851 0.8400 -0.0004 21 1 5.5458 -6.1208 0.0105 22 1 4.0512 -8.1619 -0.0022 23 1 1.7897 -9.0779 -0.0131 24 1 -0.1692 -7.5974 -0.0109 25 1 0.0947 -5.1711 0.0017 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073754803.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:33 Heat of formation + Delta-G solvation = 59.876226 kcal Electronic energy + Delta-G solvation = -12957.913527 eV Core-core repulsion = 10641.454388 eV Total energy + Delta-G solvation = -2316.459140 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.037 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43377 -37.37523 -32.87846 -32.68230 -31.18655 -29.83333 -25.88803 -24.50993 -23.59036 -22.09652 -18.38323 -17.80498 -17.33357 -16.32207 -15.14812 -15.06260 -14.33362 -14.29346 -13.84261 -13.38131 -12.99801 -12.12634 -11.94232 -11.58135 -11.21981 -11.21732 -11.12741 -10.47269 -10.41735 -9.80684 -9.34333 -9.20202 -8.95094 -8.60646 -8.32635 -6.91806 -6.62439 -4.31062 0.72779 1.18139 2.21972 2.81518 3.16801 3.16985 3.24059 3.42118 3.90381 4.47790 4.75211 4.85865 4.90837 5.01118 5.09623 5.11286 5.40661 5.44570 5.57604 5.98713 6.12100 6.13599 6.29473 6.59451 6.76187 6.84607 7.04883 7.44344 8.29991 8.90170 9.73379 10.44202 Molecular weight = 232.04amu Principal moments of inertia in cm(-1) A = 0.043438 B = 0.007662 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.436805 B = 3653.750603 C = 4288.337916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.076 3.924 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.113 0.887 9 S 0.168 5.832 10 C 0.058 3.942 11 N -0.291 5.291 12 N -0.237 5.237 13 C -0.003 4.003 14 C -0.054 4.054 15 C -0.109 4.109 16 C -0.104 4.104 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.075 4.075 20 H 0.278 0.722 21 H 0.159 0.841 22 H 0.129 0.871 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -12.218 0.001 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.134 4.134 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.688 4.688 8 H 0.131 0.869 9 S 0.419 5.581 10 C -0.202 4.202 11 N -0.136 5.136 12 N -0.072 5.072 13 C -0.187 4.187 14 C -0.062 4.062 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.147 4.147 18 C -0.098 4.098 19 C -0.086 4.086 20 H 0.088 0.912 21 H 0.176 0.824 22 H 0.147 0.853 23 H 0.141 0.859 24 H 0.143 0.857 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.322 -10.611 -0.009 10.616 hybrid contribution 0.876 -0.218 0.004 0.903 sum 1.198 -10.829 -0.006 10.895 Atomic orbital electron populations 1.69915 1.06306 1.29055 1.44803 1.25216 0.95176 1.00153 0.92881 0.85936 0.79154 0.79228 0.79772 1.19210 1.20667 1.19206 1.23603 0.98073 0.89871 1.57248 0.86906 1.83237 1.01510 0.96824 1.76548 1.26161 1.01333 0.95682 0.97017 1.73200 0.94798 1.27490 1.18141 1.72139 1.25146 1.03784 1.06083 1.23990 0.95878 0.93632 1.05171 1.18761 0.94194 0.94362 0.98881 1.20816 0.97671 0.93154 1.01416 1.20907 0.92592 0.99751 0.99129 1.20880 0.98916 0.93317 1.01571 1.20992 0.96113 0.95504 0.97183 1.18507 0.94416 0.92924 1.02790 0.91217 0.82424 0.85275 0.85948 0.85720 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.66 13.22 55.49 0.73 -22.92 15 2 C 0.08 2.04 5.49 -17.47 -0.10 1.94 15 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.54 -14.96 9.27 30.94 0.29 -14.67 15 8 H 0.11 3.23 6.59 -52.49 -0.35 2.88 15 9 S 0.17 4.15 20.31 -107.50 -2.18 1.97 15 10 C 0.06 1.37 7.11 -16.11 -0.11 1.25 15 11 N -0.29 -7.31 9.61 31.85 0.31 -7.00 15 12 N -0.24 -5.35 11.40 30.90 0.35 -5.00 15 13 C 0.00 -0.05 11.20 -16.79 -0.19 -0.24 15 14 C -0.05 -0.95 5.75 -106.85 -0.61 -1.56 15 15 C -0.11 -1.47 9.84 -39.57 -0.39 -1.86 15 16 C -0.10 -1.26 9.95 -39.88 -0.40 -1.65 15 17 C -0.13 -1.67 9.95 -39.84 -0.40 -2.06 15 18 C -0.08 -1.29 9.46 -39.65 -0.37 -1.66 15 19 C -0.07 -1.49 5.76 -106.68 -0.61 -2.10 15 20 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 21 H 0.16 2.18 8.06 -52.49 -0.42 1.76 15 22 H 0.13 1.30 8.06 -52.49 -0.42 0.88 15 23 H 0.12 1.06 8.06 -52.49 -0.42 0.63 15 24 H 0.12 1.26 8.06 -52.49 -0.42 0.84 15 25 H 0.14 2.21 7.06 -52.49 -0.37 1.84 15 LS Contribution 243.39 15.07 3.67 3.67 Total: -1.00 -30.62 243.39 -6.59 -37.21 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -1.54 Total: -1.24 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.90 Total: -22.61 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 1.39 Total: -34.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.18 Total: 1.97 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.62 -6.59 -37.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073754803.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.087 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds