Wall clock time and date at job start Sun Mar 29 2020 22:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31386 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48505 * 109.47148 * 240.00306 * 3 2 1 5 5 H 1.48502 * 109.46710 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.47146 * 120.00233 * 3 2 1 7 7 C 1.39010 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.36911 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99988 * 180.02562 * 9 7 2 11 11 O 1.21631 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.47470 * 120.00128 * 179.97438 * 10 9 7 13 13 C 1.36583 * 125.92805 * 180.02562 * 12 10 9 14 14 N 1.36206 * 107.00036 * 179.97438 * 13 12 10 15 15 C 1.36664 * 132.43765 * 180.02562 * 14 13 12 16 16 C 1.35485 * 119.09972 * 180.02562 * 15 14 13 17 17 C 1.40294 * 119.35807 * 359.96314 * 16 15 14 18 18 N 1.31154 * 120.41221 * 0.02562 * 17 16 15 19 19 C 1.34272 * 120.94582 * 359.97438 * 18 17 16 20 20 N 1.32223 * 131.63722 * 179.97438 * 19 18 17 21 21 H 0.97008 * 120.00182 * 359.97438 * 1 2 3 22 22 H 0.96998 * 120.00011 * 359.97438 * 9 7 2 23 23 H 1.07997 * 126.50245 * 359.92538 * 13 12 10 24 24 H 1.07994 * 120.44965 * 359.97117 * 15 14 13 25 25 H 1.08004 * 120.32191 * 180.02562 * 16 15 14 26 26 H 1.07996 * 119.79397 * 180.29433 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1016 1.6964 -1.2126 5 1 1.2828 2.7464 0.0006 6 1 3.1016 1.6963 1.2124 7 6 2.0089 -1.2038 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3244 -2.3895 -0.0016 10 6 1.9982 -3.5567 -0.0016 11 8 3.2145 -3.5568 -0.0011 12 6 1.2609 -4.8339 -0.0022 13 6 1.8180 -6.0809 -0.0017 14 7 0.7912 -6.9758 -0.0020 15 6 0.7586 -8.3420 -0.0013 16 6 -0.4406 -8.9726 -0.0023 17 6 -1.6184 -8.2104 -0.0032 18 7 -1.5613 -6.9001 -0.0036 19 6 -0.3808 -6.2604 -0.0026 20 7 -0.0792 -4.9730 -0.0032 21 1 -0.4851 0.8401 0.0004 22 1 0.3544 -2.3895 -0.0016 23 1 2.8726 -6.3134 -0.0021 24 1 1.6763 -8.9114 -0.0008 25 1 -0.4893 -10.0515 -0.0013 26 1 -2.5781 -8.7057 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162025408.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:31 Heat of formation + Delta-G solvation = 47.263223 kcal Electronic energy + Delta-G solvation = -15028.570596 eV Core-core repulsion = 12301.104396 eV Total energy + Delta-G solvation = -2727.466200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.00462 -40.21612 -38.80700 -36.11230 -35.61459 -33.40429 -31.94848 -30.38986 -27.66613 -25.75660 -24.23029 -23.81225 -21.13295 -20.09983 -19.35975 -18.52585 -17.60304 -17.41535 -16.89403 -16.51701 -15.85485 -15.40991 -15.20519 -15.05525 -14.60057 -13.82064 -13.57463 -13.41973 -13.01392 -12.79689 -12.51776 -12.12470 -11.65291 -11.59355 -10.85856 -10.70634 -10.20466 -10.07568 -9.33200 -8.55824 -6.04381 -0.42651 0.04746 1.02666 1.33345 1.40391 1.49591 1.54481 2.25053 2.36494 2.51700 2.63863 3.02720 3.23915 3.54609 3.63013 3.80475 4.18528 4.26144 4.45232 4.64688 4.74875 5.19013 5.26885 5.32779 5.60782 5.88219 6.38323 6.50935 6.85959 6.98035 7.40295 7.92652 8.61322 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.058723 B = 0.005727 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.699743 B = 4887.774558 C = 5354.632830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.015 4.015 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.540 5.540 10 C 0.499 3.501 11 O -0.625 6.625 12 C 0.011 3.989 13 C -0.019 4.019 14 N -0.402 5.402 15 C 0.100 3.900 16 C -0.188 4.188 17 C 0.184 3.816 18 N -0.489 5.489 19 C 0.360 3.640 20 N -0.508 5.508 21 H 0.283 0.717 22 H 0.399 0.601 23 H 0.223 0.777 24 H 0.222 0.778 25 H 0.224 0.776 26 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -20.949 0.004 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.216 4.216 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.472 4.472 8 H 0.113 0.887 9 N -0.172 5.172 10 C 0.286 3.714 11 O -0.514 6.514 12 C -0.122 4.122 13 C -0.154 4.154 14 N -0.079 5.079 15 C -0.029 4.029 16 C -0.210 4.210 17 C -0.002 4.002 18 N -0.203 5.203 19 C 0.009 3.991 20 N -0.233 5.233 21 H 0.093 0.907 22 H 0.233 0.767 23 H 0.239 0.761 24 H 0.238 0.762 25 H 0.241 0.759 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.584 -19.349 0.002 19.520 hybrid contribution 0.903 0.076 0.000 0.906 sum -1.681 -19.273 0.002 19.346 Atomic orbital electron populations 1.69750 1.07602 1.30135 1.47633 1.26455 0.96605 1.03404 0.95113 0.84756 0.77619 0.74970 0.79524 1.18899 1.19222 1.18907 1.19937 0.93388 0.83405 1.50501 0.88747 1.41899 1.09870 1.04796 1.60644 1.16972 0.86369 0.82599 0.85473 1.90552 1.13554 1.87296 1.59984 1.20812 0.89247 0.94833 1.07265 1.22708 0.94651 0.86544 1.11517 1.43950 1.08946 1.08456 1.46588 1.23325 1.04532 0.79005 0.96008 1.22486 0.89596 1.05176 1.03696 1.24406 1.02663 0.86409 0.86765 1.68063 1.20403 1.13500 1.18297 1.22069 0.83547 0.88125 1.05336 1.70704 1.13937 1.14555 1.24092 0.90712 0.76738 0.76098 0.76179 0.75899 0.75583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 13.05 21.67 0.28 -53.39 15 2 C -0.01 -0.83 5.50 84.94 0.47 -0.36 15 3 Si 1.01 44.35 29.55 68.60 2.03 46.38 15 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 15 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 7 C -0.34 -21.05 9.68 84.09 0.81 -20.24 15 8 H 0.09 5.89 7.15 -2.91 -0.02 5.87 15 9 N -0.54 -32.67 5.28 -309.94 -1.64 -34.30 15 10 C 0.50 28.33 7.77 86.68 0.67 29.00 15 11 O -0.62 -37.38 16.44 -4.13 -0.07 -37.45 15 12 C 0.01 0.50 6.94 40.75 0.28 0.79 15 13 C -0.02 -0.67 11.48 83.63 0.96 0.29 15 14 N -0.40 -11.79 2.93 -356.72 -1.05 -12.83 15 15 C 0.10 1.44 11.05 83.30 0.92 2.36 15 16 C -0.19 -1.59 10.06 22.13 0.22 -1.36 15 17 C 0.18 2.79 11.27 85.29 0.96 3.75 15 18 N -0.49 -15.07 10.48 -197.16 -2.07 -17.14 15 19 C 0.36 13.71 8.90 261.35 2.33 16.04 15 20 N -0.51 -24.49 11.01 -188.83 -2.08 -26.56 15 21 H 0.28 15.33 8.31 -92.70 -0.77 14.56 15 22 H 0.40 24.55 7.59 -92.71 -0.70 23.85 15 23 H 0.22 6.39 8.06 -2.91 -0.02 6.37 15 24 H 0.22 0.94 8.06 -2.91 -0.02 0.91 15 25 H 0.22 -0.77 8.06 -2.91 -0.02 -0.80 15 26 H 0.23 1.06 8.06 -2.91 -0.02 1.04 15 Total: -1.00 -88.20 247.99 3.57 -84.62 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.53 Total: 20.42 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: 7.63 Total: 30.27 kcal Atomic # 7 Polarization: -137.68 SS G_CDS: -6.54 Total: -144.23 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.07 Total: -37.45 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -88.20 3.57 -84.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162025408.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.886 kcal (2) G-P(sol) polarization free energy of solvation -88.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds