Wall clock time and date at job start Sun Mar 29 2020 21:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32568 * 119.99671 * 2 1 4 4 C 1.47809 * 120.00184 * 352.62605 * 3 2 1 5 5 C 1.39539 * 120.13973 * 322.43477 * 4 3 2 6 6 C 1.37981 * 119.85321 * 179.71807 * 5 4 3 7 7 C 1.38342 * 120.13965 * 0.53568 * 6 5 4 8 8 C 1.38340 * 120.28864 * 359.75862 * 7 6 5 9 9 C 1.37971 * 120.14320 * 359.96176 * 8 7 6 10 10 C 1.50702 * 120.00278 * 179.72524 * 2 1 3 11 11 N 1.46897 * 109.46864 * 275.00222 * 10 2 1 12 12 C 1.46902 * 111.00178 * 180.02562 * 11 10 2 13 13 C 1.50695 * 109.47286 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00189 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99921 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99690 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99828 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46901 * 60.00361 * 17 15 13 19 19 H 1.48498 * 109.46740 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47151 * 299.99922 * 17 15 13 21 21 H 1.09000 * 109.46912 * 88.57813 * 1 2 3 22 22 H 1.08997 * 109.46656 * 208.57530 * 1 2 3 23 23 H 1.09000 * 109.47311 * 328.57522 * 1 2 3 24 24 H 1.07995 * 119.99944 * 172.63108 * 3 2 1 25 25 H 1.08004 * 120.07308 * 359.97129 * 5 4 3 26 26 H 1.07993 * 119.92524 * 180.27207 * 6 5 4 27 27 H 1.08002 * 119.85728 * 179.74469 * 7 6 5 28 28 H 1.08002 * 119.92985 * 179.97438 * 8 7 6 29 29 H 1.08004 * 120.07413 * 180.02562 * 9 8 7 30 30 H 1.08996 * 109.46922 * 34.99445 * 10 2 1 31 31 H 1.08997 * 109.47341 * 155.00248 * 10 2 1 32 32 H 1.00900 * 111.00801 * 56.04298 * 11 10 2 33 33 H 1.08998 * 109.46459 * 299.99891 * 12 11 10 34 34 H 1.09005 * 109.47089 * 59.99329 * 12 11 10 35 35 H 0.97000 * 119.99587 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 1.4399 2.4229 -0.1643 5 6 0.3508 2.4996 -1.0332 6 6 -0.3300 3.6911 -1.1776 7 6 0.0721 4.8108 -0.4716 8 6 1.1549 4.7429 0.3867 9 6 1.8405 3.5561 0.5445 10 6 2.2606 -1.3051 0.0063 11 7 2.4009 -1.7828 1.3883 12 6 3.1327 -3.0557 1.4336 13 6 3.2571 -3.5131 2.8641 14 1 2.8351 -2.9175 3.6601 15 6 3.9097 -4.6919 3.1567 16 7 4.4231 -5.4174 2.1874 17 14 4.0645 -5.2584 4.9300 18 1 2.7102 -5.4445 5.5102 19 1 4.8031 -6.5458 4.9756 20 1 4.8026 -4.2356 5.7138 21 1 -0.3633 0.0255 -1.0274 22 1 -0.3632 -0.9025 0.4915 23 1 -0.3634 0.8769 0.5358 24 1 3.2431 1.1520 0.1200 25 1 0.0387 1.6273 -1.5883 26 1 -1.1758 3.7507 -1.8464 27 1 -0.4615 5.7422 -0.5913 28 1 1.4640 5.6207 0.9347 29 1 2.6854 3.5042 1.2153 30 1 1.7132 -2.0434 -0.5796 31 1 3.2489 -1.1561 -0.4287 32 1 1.5001 -1.8672 1.8350 33 1 2.5918 -3.8064 0.8575 34 1 4.1271 -2.9185 1.0085 35 1 4.8819 -6.2468 2.3932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207565090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:46 Heat of formation + Delta-G solvation = 30.091106 kcal Electronic energy + Delta-G solvation = -14897.052174 eV Core-core repulsion = 12473.640684 eV Total energy + Delta-G solvation = -2423.411490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.34364 -36.60818 -34.17712 -32.27926 -31.08559 -30.21386 -27.46332 -26.74439 -24.22258 -22.41489 -21.78156 -21.22452 -18.37724 -16.58645 -16.34743 -15.49467 -15.22509 -14.60073 -14.52896 -13.98898 -13.72376 -13.37876 -13.30836 -12.69217 -12.45204 -12.35376 -11.87338 -11.66659 -11.29448 -11.11370 -11.00025 -10.82817 -10.67186 -10.46644 -9.95559 -9.49383 -9.18408 -8.93656 -8.48189 -7.99109 -7.29418 -6.03226 -4.05366 1.08679 1.39655 2.53598 3.34065 3.37645 3.41124 3.86768 4.43620 4.81965 4.88145 4.93086 5.07518 5.17028 5.32534 5.33547 5.43673 5.53146 5.61072 5.73973 5.83253 5.98039 6.01216 6.11085 6.13187 6.24050 6.42495 6.47369 6.54942 6.86080 7.00373 7.12234 7.23981 7.40714 7.77728 8.11943 8.38420 8.59783 9.03613 9.59493 11.07865 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.050121 B = 0.004074 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.518704 B = 6871.299934 C = 7119.380494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.135 4.135 4 C -0.037 4.037 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.090 3.910 11 N -0.683 5.683 12 C 0.193 3.807 13 C -0.515 4.515 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.127 0.873 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.329 0.671 33 H -0.013 1.013 34 H 0.028 0.972 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.657 16.830 -6.671 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.037 4.037 5 C -0.136 4.136 6 C -0.141 4.141 7 C -0.149 4.149 8 C -0.140 4.140 9 C -0.131 4.131 10 C -0.039 4.039 11 N -0.314 5.314 12 C 0.066 3.934 13 C -0.554 4.554 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.728 3.272 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.145 0.855 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.004 0.996 34 H 0.046 0.954 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.982 17.012 -6.579 19.910 hybrid contribution -0.441 -1.015 0.599 1.259 sum -8.423 15.997 -5.980 19.043 Atomic orbital electron populations 1.21095 0.92760 1.02639 1.01404 1.22161 0.95184 0.94971 0.96536 1.21435 0.99371 0.90106 1.04524 1.19153 0.94977 0.93774 0.95829 1.21541 0.95478 0.98030 0.98581 1.21061 1.00023 0.93071 0.99981 1.21131 0.97611 0.98381 0.97796 1.21066 0.96223 0.97739 0.98945 1.21331 1.00203 0.92313 0.99285 1.20962 0.98429 0.91931 0.92614 1.60770 1.23425 1.34396 1.12783 1.19587 0.93390 0.83262 0.97142 1.21151 1.35955 1.05702 0.92562 0.91988 1.24995 0.95515 0.96493 0.97570 1.69954 1.37498 1.14616 1.31729 0.86527 0.78200 0.77789 0.84686 1.20251 1.21327 1.20120 0.91573 0.91883 0.91380 0.85946 0.85475 0.86341 0.86537 0.86299 0.85858 0.95388 0.91066 0.85467 0.99561 0.95363 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.26 36.01 0.30 -1.28 16 2 C -0.09 -1.33 5.50 -101.25 -0.56 -1.89 16 3 C -0.14 -1.97 9.37 -37.58 -0.35 -2.32 16 4 C -0.04 -0.49 5.09 -105.01 -0.53 -1.02 16 5 C -0.12 -1.39 7.76 -39.19 -0.30 -1.69 16 6 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 7 C -0.13 -1.31 10.04 -39.51 -0.40 -1.71 16 8 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 9 C -0.11 -1.38 9.79 -39.20 -0.38 -1.76 16 10 C 0.09 1.62 5.84 -4.98 -0.03 1.60 16 11 N -0.68 -14.95 6.48 -116.34 -0.75 -15.70 16 12 C 0.19 5.13 5.44 -4.98 -0.03 5.10 16 13 C -0.52 -14.80 9.32 -34.44 -0.32 -15.12 16 14 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H 0.07 0.72 6.63 -51.93 -0.34 0.38 16 22 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 23 H 0.07 0.86 6.49 -51.93 -0.34 0.53 16 24 H 0.12 1.82 8.05 -52.49 -0.42 1.40 16 25 H 0.13 1.37 5.58 -52.48 -0.29 1.07 16 26 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 32 H 0.33 6.91 8.72 -39.29 -0.34 6.57 16 33 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 296.95 15.07 4.47 4.47 Total: -1.00 -30.51 296.95 -9.15 -39.66 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.08 Total: 3.01 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.50 Total: -21.95 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.02 Total: -42.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.51 -9.15 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207565090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.750 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds