Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48501 * 109.47434 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46890 * 299.99587 * 3 2 1 6 6 H 1.48499 * 109.47194 * 59.99828 * 3 2 1 7 7 C 1.37884 * 120.00557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00397 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99248 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46771 * 179.97438 * 9 7 2 11 11 C 1.38241 * 119.98197 * 100.00239 * 10 9 7 12 12 C 1.38198 * 120.07049 * 180.30129 * 11 10 9 13 13 C 1.38471 * 120.03206 * 359.44171 * 12 11 10 14 14 F 1.35099 * 120.01595 * 180.27975 * 13 12 11 15 15 C 1.38496 * 119.96722 * 0.55306 * 13 12 11 16 16 Cl 1.73599 * 120.03811 * 179.74553 * 15 13 12 17 17 C 1.38433 * 119.97984 * 280.02131 * 10 9 7 18 18 F 1.35094 * 120.01803 * 359.95503 * 17 10 9 19 19 H 0.97000 * 120.00042 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47334 * 60.00220 * 9 7 2 21 21 H 1.09000 * 109.47506 * 299.99887 * 9 7 2 22 22 H 1.08002 * 119.96191 * 0.02562 * 11 10 9 23 23 H 1.07993 * 119.98118 * 179.72257 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.5213 -4.3048 1.1798 12 6 3.4238 -5.3514 1.1830 13 6 4.0294 -5.7478 0.0025 14 9 4.9074 -6.7747 0.0051 15 6 3.7391 -5.0875 -1.1797 16 17 4.5024 -5.5787 -2.6595 17 6 2.8385 -4.0348 -1.1803 18 9 2.5536 -3.3896 -2.3325 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.0460 -3.9995 2.1003 23 1 3.6533 -5.8633 2.1058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215083223.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = -99.172859 kcal Electronic energy + Delta-G solvation = -13641.918027 eV Core-core repulsion = 10729.996014 eV Total energy + Delta-G solvation = -2911.922013 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 232.016 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.06072 -49.94690 -40.01040 -37.77515 -35.44432 -32.95348 -31.63115 -28.86274 -25.40713 -24.16883 -22.60008 -19.26428 -18.61658 -18.40085 -17.30854 -17.11635 -16.71466 -16.33515 -16.24161 -15.39136 -15.07445 -14.45660 -14.05572 -13.73361 -13.55308 -13.39292 -12.85083 -12.61773 -12.46121 -12.39438 -12.21881 -11.65182 -11.50431 -10.62388 -9.87780 -9.56746 -8.22867 -6.34927 -0.20073 -0.06083 0.78191 1.39561 1.41625 1.53433 2.26524 2.43819 2.69936 3.10056 3.35720 3.62620 3.80629 4.11958 4.48963 4.59115 4.91838 5.01204 5.11227 5.29418 5.58996 5.66073 5.70414 6.10088 6.75730 7.33722 8.87054 Molecular weight = 232.02amu Principal moments of inertia in cm(-1) A = 0.036300 B = 0.007732 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.165043 B = 3620.311848 C = 3946.364995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.058 3.942 10 C -0.092 4.092 11 C -0.058 4.058 12 C -0.126 4.126 13 C 0.112 3.888 14 F -0.123 7.123 15 C -0.122 4.122 16 Cl -0.041 7.041 17 C 0.112 3.888 18 F -0.133 7.133 19 H 0.266 0.734 20 H 0.005 0.995 21 H 0.032 0.968 22 H 0.168 0.832 23 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -10.749 2.045 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.093 4.093 11 C -0.076 4.076 12 C -0.145 4.145 13 C 0.092 3.908 14 F -0.101 7.101 15 C -0.150 4.150 16 Cl -0.012 7.012 17 C 0.092 3.908 18 F -0.111 7.111 19 H 0.075 0.925 20 H 0.023 0.977 21 H 0.050 0.950 22 H 0.186 0.814 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.143 -10.703 1.857 13.001 hybrid contribution 0.255 0.941 -0.813 1.269 sum 7.398 -9.762 1.044 12.293 Atomic orbital electron populations 1.70049 1.07472 1.27977 1.50964 1.25814 0.95720 1.02837 0.94492 0.85462 0.78975 0.79094 0.77950 1.19073 1.20664 1.19739 1.21324 0.93018 0.91058 1.51367 0.92780 1.18072 0.92536 0.89864 0.97369 1.20677 0.98855 0.97806 0.91972 1.21211 0.95779 0.92909 0.97660 1.21488 0.97024 0.98477 0.97497 1.17077 0.93053 0.88197 0.92480 1.91528 1.66028 1.55466 1.97093 1.21018 1.03243 1.01028 0.89744 1.98355 1.79902 1.90541 1.32394 1.17211 0.97935 0.92659 0.83028 1.91489 1.92081 1.80302 1.47228 0.92465 0.97685 0.95021 0.81426 0.79300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 13.29 21.45 0.28 -53.50 14 2 C 0.01 0.57 5.46 84.66 0.46 1.03 14 3 Si 0.96 43.28 29.54 68.60 2.03 45.31 14 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 14 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 14 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 14 7 C -0.53 -28.94 9.09 25.60 0.23 -28.71 14 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 14 9 C 0.06 2.91 4.83 29.10 0.14 3.05 14 10 C -0.09 -3.67 5.08 -19.82 -0.10 -3.77 14 11 C -0.06 -1.73 9.66 22.26 0.22 -1.52 14 12 C -0.13 -3.08 10.02 22.32 0.22 -2.86 14 13 C 0.11 3.21 7.27 22.39 0.16 3.38 14 14 F -0.12 -3.29 16.84 44.97 0.76 -2.53 14 15 C -0.12 -4.12 6.33 22.40 0.14 -3.98 14 16 Cl -0.04 -1.28 28.28 -2.72 -0.08 -1.35 14 17 C 0.11 4.46 7.21 22.39 0.16 4.62 14 18 F -0.13 -5.91 16.23 44.97 0.73 -5.18 14 19 H 0.27 14.54 8.31 -92.71 -0.77 13.77 14 20 H 0.00 0.27 7.94 -2.39 -0.02 0.25 14 21 H 0.03 1.58 8.00 -2.39 -0.02 1.56 14 22 H 0.17 4.28 8.04 -2.91 -0.02 4.26 14 23 H 0.19 2.94 8.06 -2.91 -0.02 2.91 14 Total: -1.00 -60.78 238.53 6.60 -54.18 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 1.24 Total: -8.16 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 1.64 Total: -28.76 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.28 Total: -53.50 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 1.49 Total: -7.71 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.35 kcal Total: -60.78 6.60 -54.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215083223.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.994 kcal (2) G-P(sol) polarization free energy of solvation -60.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds