Wall clock time and date at job start Sun Mar 29 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86790 * 120.00162 * 2 1 4 4 H 1.48505 * 109.47432 * 275.38038 * 3 2 1 5 5 H 1.48508 * 109.47190 * 35.37613 * 3 2 1 6 6 H 1.48505 * 109.47527 * 155.37791 * 3 2 1 7 7 C 1.39951 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00324 * 342.13515 * 7 2 1 9 9 C 1.41019 * 119.99326 * 162.12631 * 7 2 1 10 10 C 1.41002 * 120.70923 * 330.03181 * 9 7 2 11 11 C 1.38006 * 118.27946 * 180.29560 * 10 9 7 12 12 C 1.38688 * 119.62875 * 359.46173 * 11 10 9 13 13 C 1.50700 * 119.27553 * 180.25783 * 12 11 10 14 14 F 1.39904 * 109.46890 * 185.29937 * 13 12 11 15 15 F 1.39903 * 109.46898 * 305.29133 * 13 12 11 16 16 F 1.39894 * 109.47218 * 65.29606 * 13 12 11 17 17 N 1.31966 * 121.44566 * 0.55638 * 12 11 10 18 18 C 1.32271 * 121.86447 * 359.72423 * 17 12 11 19 19 N 1.38085 * 119.90214 * 180.02562 * 18 17 12 20 20 H 0.96997 * 119.99900 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.85867 * 0.03309 * 10 9 7 22 22 H 1.08005 * 120.18318 * 179.72489 * 11 10 9 23 23 H 0.97002 * 120.00345 * 179.97438 * 19 18 17 24 24 H 0.97002 * 120.00250 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.3766 2.1120 -1.3939 5 1 1.5016 2.6172 0.8106 6 1 3.5926 1.4100 0.5833 7 6 2.0084 -1.2121 0.0005 8 1 1.5075 -2.1246 0.2879 9 6 3.3676 -1.2416 -0.3743 10 6 3.8786 -0.3124 -1.3036 11 6 5.2149 -0.3908 -1.6392 12 6 6.0133 -1.3616 -1.0530 13 6 7.4728 -1.4363 -1.4208 14 9 8.0512 -2.5537 -0.8091 15 9 7.5985 -1.5478 -2.8097 16 9 8.1234 -0.2771 -0.9851 17 7 5.5216 -2.2251 -0.1845 18 6 4.2487 -2.2063 0.1746 19 7 3.7772 -3.1289 1.0874 20 1 -0.4850 0.8400 0.0004 21 1 3.2398 0.4385 -1.7446 22 1 5.6376 0.3027 -2.3511 23 1 2.8441 -3.1162 1.3520 24 1 4.3792 -3.7898 1.4641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238624117.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:44 Heat of formation + Delta-G solvation = -128.911379 kcal Electronic energy + Delta-G solvation = -16100.074284 eV Core-core repulsion = 12790.819089 eV Total energy + Delta-G solvation = -3309.255196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.39218 -46.94766 -46.85749 -38.96950 -34.38466 -33.75106 -31.64637 -29.06025 -27.20609 -23.83427 -22.09891 -21.15672 -18.15952 -17.79619 -17.68805 -17.48583 -16.27156 -15.60899 -14.95488 -13.99682 -13.90375 -13.59457 -13.53168 -13.37481 -13.35844 -13.08338 -13.07380 -13.02774 -12.32862 -11.76216 -11.51863 -11.00201 -10.55460 -10.23186 -9.88926 -9.64365 -8.55656 -8.49544 -7.28766 -7.12671 -4.71745 2.02863 2.55502 2.92299 3.03806 3.14418 3.42207 3.75259 4.18341 4.37837 4.79402 4.95153 5.00194 5.37657 5.84211 6.09919 6.23467 6.51239 6.75768 6.93836 7.25137 7.38925 7.85904 7.97400 8.27559 8.39279 8.54014 9.28474 9.70583 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.036436 B = 0.009279 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.279065 B = 3016.869126 C = 3485.565841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.083 3.917 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.418 4.418 8 H 0.098 0.902 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.104 4.104 12 C -0.081 4.081 13 C 0.530 3.470 14 F -0.178 7.178 15 F -0.189 7.189 16 F -0.190 7.190 17 N -0.500 5.500 18 C 0.337 3.663 19 N -0.853 5.853 20 H 0.292 0.708 21 H 0.117 0.883 22 H 0.110 0.890 23 H 0.407 0.593 24 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 0.255 -0.386 5.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.139 4.139 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.447 4.447 8 H 0.116 0.884 9 C 0.025 3.975 10 C -0.240 4.240 11 C -0.127 4.127 12 C -0.211 4.211 13 C 0.475 3.525 14 F -0.159 7.159 15 F -0.171 7.171 16 F -0.171 7.171 17 N -0.218 5.218 18 C 0.090 3.910 19 N -0.401 5.401 20 H 0.102 0.898 21 H 0.135 0.865 22 H 0.128 0.872 23 H 0.238 0.762 24 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.728 -0.172 -0.140 5.732 hybrid contribution -0.260 1.112 -0.255 1.170 sum 5.469 0.939 -0.396 5.563 Atomic orbital electron populations 1.69680 1.08136 1.31091 1.31998 1.26237 0.94850 1.02083 0.90757 0.86230 0.81339 0.79197 0.79381 1.19099 1.21297 1.16578 1.19330 0.92344 0.96296 1.36756 0.88374 1.18215 0.93810 0.92791 0.92715 1.20914 0.94942 1.04983 1.03118 1.20883 0.94553 0.97602 0.99664 1.19269 0.91279 1.02572 1.08012 1.18074 0.87818 0.72967 0.73651 1.93122 1.86487 1.53249 1.83091 1.93135 1.96764 1.95834 1.31319 1.93139 1.83799 1.50590 1.89612 1.65927 1.14282 1.25416 1.16188 1.18178 0.87338 0.92976 0.92482 1.41612 1.13325 1.36258 1.48886 0.89755 0.86508 0.87211 0.76247 0.78385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.74 13.93 55.55 0.77 -17.96 14 2 C 0.08 1.95 5.42 -17.32 -0.09 1.86 14 3 Si 0.91 19.08 24.53 -169.99 -4.17 14.91 14 4 H -0.27 -5.37 6.71 56.52 0.38 -4.99 14 5 H -0.29 -5.76 7.11 56.52 0.40 -5.36 14 6 H -0.24 -5.35 6.85 56.52 0.39 -4.96 14 7 C -0.42 -9.98 8.93 -37.89 -0.34 -10.32 14 8 H 0.10 2.34 7.03 -52.49 -0.37 1.98 14 9 C 0.03 0.78 5.12 -106.47 -0.55 0.24 14 10 C -0.21 -4.94 7.28 -38.62 -0.28 -5.22 14 11 C -0.10 -2.27 9.55 -39.50 -0.38 -2.65 14 12 C -0.08 -1.82 6.28 -82.37 -0.52 -2.34 14 13 C 0.53 10.68 3.31 36.01 0.12 10.80 14 14 F -0.18 -3.61 16.84 2.25 0.04 -3.57 14 15 F -0.19 -3.59 17.14 2.25 0.04 -3.55 14 16 F -0.19 -3.66 17.28 2.25 0.04 -3.62 14 17 N -0.50 -11.63 9.72 -8.11 -0.08 -11.71 14 18 C 0.34 7.64 7.79 -155.03 -1.21 6.43 14 19 N -0.85 -15.90 8.97 31.45 0.28 -15.62 14 20 H 0.29 6.28 8.30 -40.82 -0.34 5.94 14 21 H 0.12 2.59 4.82 -52.49 -0.25 2.33 14 22 H 0.11 2.10 8.06 -52.48 -0.42 1.68 14 23 H 0.41 7.08 7.12 -40.82 -0.29 6.78 14 24 H 0.39 6.36 8.95 -40.82 -0.37 5.99 14 LS Contribution 227.04 15.07 3.42 3.42 Total: -1.00 -25.74 227.04 -3.77 -29.50 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.87 Total: 9.39 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.24 Total: -1.20 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.98 Total: -45.29 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 0.12 Total: -10.75 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.17 Total: 14.91 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -25.74 -3.77 -29.50 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624117.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.407 kcal (2) G-P(sol) polarization free energy of solvation -25.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds