Wall clock time and date at job start Sun Mar 29 2020 22:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48497 * 109.47163 * 275.38982 * 3 2 1 5 5 H 1.48500 * 109.46969 * 35.39120 * 3 2 1 6 6 H 1.48504 * 109.47024 * 155.38831 * 3 2 1 7 7 C 1.40024 * 120.00742 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99470 * 341.54132 * 7 2 1 9 9 C 1.41552 * 120.00211 * 161.53362 * 7 2 1 10 10 C 1.40798 * 120.99424 * 330.96871 * 9 7 2 11 11 C 1.38655 * 118.78824 * 179.97438 * 10 9 7 12 12 N 1.39090 * 119.58629 * 180.02562 * 11 10 9 13 13 N 1.32529 * 120.82937 * 0.02562 * 11 10 9 14 14 C 1.32088 * 122.21761 * 359.97438 * 13 11 10 15 15 C 1.50701 * 119.44646 * 179.97438 * 14 13 11 16 16 F 1.39910 * 109.46648 * 5.00018 * 15 14 13 17 17 F 1.39891 * 109.47456 * 124.99960 * 15 14 13 18 18 F 1.39892 * 109.47125 * 245.00705 * 15 14 13 19 19 C 1.37589 * 121.11618 * 0.26398 * 14 13 11 20 20 H 0.96997 * 120.00262 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.60261 * 359.95707 * 10 9 7 22 22 H 0.96995 * 120.00429 * 179.97438 * 12 11 10 23 23 H 0.97001 * 119.99838 * 359.97438 * 12 11 10 24 24 H 1.08000 * 120.48491 * 179.74522 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3749 2.1123 -1.3939 5 1 1.5003 2.6171 0.8109 6 1 3.5913 1.4101 0.5831 7 6 2.0077 -1.2126 -0.0005 8 1 1.5094 -2.1239 0.2952 9 6 3.3686 -1.2438 -0.3888 10 6 3.8813 -0.3106 -1.3100 11 6 5.2216 -0.3828 -1.6577 12 7 5.7457 0.5311 -2.5658 13 7 6.0096 -1.3118 -1.1357 14 6 5.5670 -2.2048 -0.2689 15 6 6.5180 -3.2342 0.2851 16 9 7.8124 -2.9683 -0.1745 17 9 6.4995 -3.1817 1.6829 18 9 6.1251 -4.5081 -0.1390 19 6 4.2510 -2.2147 0.1323 20 1 -0.4850 0.8400 0.0004 21 1 3.2423 0.4475 -1.7381 22 1 6.6826 0.4864 -2.8131 23 1 5.1743 1.2133 -2.9518 24 1 3.8990 -2.9521 0.8386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238655537.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:52 Heat of formation + Delta-G solvation = -146.603210 kcal Electronic energy + Delta-G solvation = -16071.917008 eV Core-core repulsion = 12761.894637 eV Total energy + Delta-G solvation = -3310.022371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 7.75 seconds Orbital eigenvalues (eV) -51.09360 -48.62381 -48.54683 -40.73168 -36.25515 -35.48427 -33.46534 -30.68386 -27.95985 -27.17475 -23.49191 -22.83700 -20.16266 -19.47989 -19.38921 -18.84584 -17.54977 -17.23861 -16.74992 -16.31735 -15.60061 -15.56361 -15.31534 -15.02960 -14.92994 -14.76113 -14.73549 -14.70566 -13.81361 -13.56764 -12.84465 -12.68630 -12.66841 -11.88512 -11.61695 -11.30103 -10.37067 -10.21303 -9.04349 -8.72504 -6.80354 0.25364 0.72925 1.25157 1.41297 1.48143 1.60882 2.07826 2.47590 2.53858 2.93340 3.17588 3.27217 3.59970 4.34741 4.45451 4.55367 4.77445 4.93134 5.12325 5.51560 5.72905 6.08210 6.32615 6.57329 6.61696 6.69686 7.49968 8.01626 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.032297 B = 0.009629 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.747711 B = 2907.168048 C = 3421.215923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.056 3.944 3 Si 0.969 3.031 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.072 0.928 9 C 0.120 3.880 10 C -0.347 4.347 11 C 0.422 3.578 12 N -0.844 5.844 13 N -0.600 5.600 14 C 0.080 3.920 15 C 0.529 3.471 16 F -0.170 7.170 17 F -0.174 7.174 18 F -0.175 7.175 19 C -0.246 4.246 20 H 0.302 0.698 21 H 0.121 0.879 22 H 0.407 0.593 23 H 0.414 0.586 24 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 1.802 -1.795 8.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.163 4.163 3 Si 0.792 3.208 4 H -0.171 1.171 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.112 3.888 10 C -0.374 4.374 11 C 0.187 3.813 12 N -0.391 5.391 13 N -0.325 5.325 14 C -0.053 4.053 15 C 0.474 3.526 16 F -0.151 7.151 17 F -0.156 7.156 18 F -0.156 7.156 19 C -0.273 4.273 20 H 0.113 0.887 21 H 0.138 0.862 22 H 0.237 0.763 23 H 0.246 0.754 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.487 1.803 -2.000 8.904 hybrid contribution -0.755 0.427 0.222 0.895 sum 7.733 2.230 -1.778 8.242 Atomic orbital electron populations 1.69644 1.09204 1.32387 1.33138 1.26861 0.95337 1.04302 0.89809 0.85414 0.79163 0.76131 0.80110 1.17135 1.20100 1.18617 1.19533 0.93413 0.96423 1.39361 0.90949 1.17718 0.92628 0.89987 0.88435 1.21301 0.95593 1.10057 1.10410 1.17904 0.88064 0.87454 0.87874 1.41967 1.14441 1.34412 1.48233 1.66346 1.38610 1.09192 1.18309 1.20145 0.91801 0.95726 0.97664 1.17897 0.79204 0.80074 0.75422 1.93161 1.39509 1.93802 1.88665 1.93180 1.96482 1.96438 1.29461 1.93180 1.90891 1.41690 1.89880 1.21561 0.92581 1.05987 1.07178 0.88718 0.86194 0.76312 0.75445 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.83 13.92 21.84 0.30 -40.52 14 2 C 0.06 2.77 5.42 85.29 0.46 3.23 14 3 Si 0.97 39.03 24.54 68.60 1.68 40.71 14 4 H -0.25 -8.98 6.70 99.48 0.67 -8.31 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 6 H -0.26 -11.26 6.85 99.48 0.68 -10.57 14 7 C -0.46 -23.80 9.63 23.52 0.23 -23.57 14 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 14 9 C 0.12 5.89 5.14 -21.12 -0.11 5.78 14 10 C -0.35 -15.52 7.11 23.00 0.16 -15.36 14 11 C 0.42 17.35 7.74 132.88 1.03 18.38 14 12 N -0.84 -25.50 9.08 -55.61 -0.50 -26.00 14 13 N -0.60 -25.99 9.73 -181.81 -1.77 -27.76 14 14 C 0.08 3.49 6.26 42.37 0.27 3.75 14 15 C 0.53 20.03 3.31 71.24 0.24 20.27 14 16 F -0.17 -6.27 16.85 44.97 0.76 -5.51 14 17 F -0.17 -6.31 17.15 44.97 0.77 -5.54 14 18 F -0.17 -6.34 17.27 44.97 0.78 -5.57 14 19 C -0.25 -11.34 9.37 22.84 0.21 -11.12 14 20 H 0.30 13.30 8.29 -92.71 -0.77 12.53 14 21 H 0.12 5.09 4.76 -2.91 -0.01 5.08 14 22 H 0.41 10.52 8.95 -92.71 -0.83 9.69 14 23 H 0.41 10.31 8.82 -92.71 -0.82 9.50 14 24 H 0.12 5.40 8.06 -2.91 -0.02 5.38 14 Total: -1.00 -55.30 230.12 4.08 -51.22 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.42 Total: 17.60 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 2.49 Total: 1.36 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -1.97 Total: -94.28 kcal Atomic # 9 Polarization: -18.92 SS G_CDS: 2.31 Total: -16.61 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.68 Total: 40.71 kcal Total: -55.30 4.08 -51.22 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238655537.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.388 kcal (2) G-P(sol) polarization free energy of solvation -55.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.75 seconds