Wall clock time and date at job start Sun Mar 29 2020 21:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86805 * 120.00168 * 2 1 4 4 H 1.48502 * 109.47099 * 270.00541 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00269 * 3 2 1 6 6 H 1.48496 * 109.47034 * 150.00450 * 3 2 1 7 7 C 1.38708 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99603 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.76195 * 100.00020 * 185.64654 * 9 7 2 11 11 C 1.39047 * 120.09471 * 6.75797 * 10 9 7 12 12 C 1.38167 * 119.92003 * 180.29554 * 11 10 9 13 13 Cl 1.73604 * 119.94216 * 179.97438 * 12 11 10 14 14 C 1.38461 * 120.10781 * 359.97438 * 12 11 10 15 15 C 1.38296 * 120.19260 * 0.02562 * 14 12 11 16 16 C 1.38255 * 120.07872 * 0.02562 * 15 14 12 17 17 F 1.35097 * 120.05249 * 179.97438 * 16 15 14 18 18 H 0.97005 * 120.00234 * 359.97438 * 1 2 3 19 19 H 1.08003 * 120.04375 * 0.25325 * 11 10 9 20 20 H 1.07998 * 119.90032 * 179.97438 * 14 12 11 21 21 H 1.08000 * 119.96176 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4480 2.6527 0.7001 6 1 3.5480 1.4401 0.6999 7 6 2.0099 -1.2013 -0.0005 8 1 3.0899 -1.2012 -0.0010 9 16 1.1289 -2.7272 -0.0005 10 6 2.4714 -3.8556 0.1694 11 6 3.7577 -3.3795 0.3979 12 6 4.8088 -4.2673 0.5245 13 17 6.4151 -3.6735 0.8091 14 6 4.5830 -5.6298 0.4248 15 6 3.3055 -6.1083 0.1976 16 6 2.2482 -5.2269 0.0686 17 9 1.0005 -5.6948 -0.1538 18 1 -0.4851 0.8401 0.0004 19 1 3.9351 -2.3170 0.4756 20 1 5.4071 -6.3207 0.5239 21 1 3.1336 -7.1717 0.1209 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258960877.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:00 Heat of formation + Delta-G solvation = -36.740182 kcal Electronic energy + Delta-G solvation = -11450.889955 eV Core-core repulsion = 8972.055308 eV Total energy + Delta-G solvation = -2478.834647 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 231.982 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.24773 -38.30004 -35.99759 -32.89078 -30.82291 -29.54005 -26.00397 -22.74971 -22.07521 -18.47875 -16.94906 -16.34085 -15.79047 -15.21825 -15.03539 -14.49147 -13.51868 -13.13575 -12.91064 -12.82621 -12.15378 -11.56183 -11.32631 -11.18267 -10.97538 -10.86797 -10.44492 -9.95228 -9.69898 -8.99405 -8.85808 -8.18505 -6.75636 -6.62712 -4.36282 1.49102 1.62635 2.47468 2.92953 3.06370 3.12996 3.21891 3.89277 3.91748 4.79267 4.81024 4.91709 5.19358 5.47622 5.79156 6.00308 6.24112 6.47830 6.64076 6.66779 7.20055 7.35311 8.00923 8.84829 10.43539 Molecular weight = 231.98amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.010260 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.658803 B = 2728.302877 C = 3876.877684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.081 3.919 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.561 4.561 8 H 0.096 0.904 9 S 0.092 5.908 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.018 4.018 13 Cl -0.087 7.087 14 C -0.138 4.138 15 C -0.121 4.121 16 C 0.076 3.924 17 F -0.137 7.137 18 H 0.277 0.723 19 H 0.154 0.846 20 H 0.129 0.871 21 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -6.881 0.779 10.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.130 4.130 3 Si 0.751 3.249 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.708 4.708 8 H 0.114 0.886 9 S 0.352 5.648 10 C -0.231 4.231 11 C -0.144 4.144 12 C -0.047 4.047 13 Cl -0.058 7.058 14 C -0.163 4.163 15 C -0.142 4.142 16 C 0.047 3.953 17 F -0.115 7.115 18 H 0.087 0.913 19 H 0.171 0.829 20 H 0.147 0.853 21 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.736 -6.645 0.671 8.804 hybrid contribution 1.770 1.135 0.122 2.106 sum 7.506 -5.510 0.793 9.345 Atomic orbital electron populations 1.69986 1.06204 1.28715 1.44301 1.25123 0.95157 0.99827 0.92914 0.86022 0.79659 0.80322 0.78919 1.19687 1.20324 1.18981 1.23403 0.96194 0.91055 1.60155 0.88627 1.83752 1.04002 0.96485 1.80574 1.22818 1.01138 0.96725 1.02468 1.21201 0.89765 1.01072 1.02315 1.20810 0.85328 0.93721 1.04825 1.98327 1.23763 1.88887 1.94807 1.20485 0.96685 0.93126 1.06024 1.20738 0.91435 0.99193 1.02796 1.17153 0.80006 0.90839 1.07277 1.91454 1.38985 1.88732 1.92345 0.91331 0.82914 0.85273 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.62 13.22 55.49 0.73 -22.89 14 2 C 0.08 2.12 5.49 -17.46 -0.10 2.03 14 3 Si 0.93 19.97 29.55 -169.99 -5.02 14.95 14 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 6 H -0.27 -5.61 7.11 56.52 0.40 -5.20 14 7 C -0.56 -14.76 8.99 30.91 0.28 -14.48 14 8 H 0.10 2.40 4.97 -52.49 -0.26 2.14 14 9 S 0.09 2.32 21.26 -107.50 -2.29 0.04 14 10 C -0.11 -2.48 6.10 -38.89 -0.24 -2.71 14 11 C -0.12 -2.37 9.00 -39.31 -0.35 -2.72 14 12 C -0.02 -0.31 6.32 -39.52 -0.25 -0.56 14 13 Cl -0.09 -1.33 28.95 -51.86 -1.50 -2.84 14 14 C -0.14 -2.12 9.83 -39.48 -0.39 -2.51 14 15 C -0.12 -1.93 10.02 -39.55 -0.40 -2.32 14 16 C 0.08 1.49 7.28 -39.18 -0.29 1.20 14 17 F -0.14 -2.71 16.76 2.25 0.04 -2.67 14 18 H 0.28 7.05 8.31 -40.82 -0.34 6.71 14 19 H 0.15 3.27 5.03 -52.48 -0.26 3.01 14 20 H 0.13 1.60 8.06 -52.49 -0.42 1.18 14 21 H 0.13 1.69 8.06 -52.49 -0.42 1.27 14 LS Contribution 228.52 15.07 3.44 3.44 Total: -1.00 -26.97 228.52 -6.83 -33.80 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -0.51 Total: -1.76 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.73 Total: -22.08 kcal Atomic # 7 Polarization: -23.62 SS G_CDS: 0.73 Total: -22.89 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.29 Total: 0.04 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -26.97 -6.83 -33.80 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258960877.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.942 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds