Wall clock time and date at job start Sun Mar 29 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31537 * 1 3 3 Si 1.86803 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47212 * 270.00028 * 3 2 1 5 5 H 1.48503 * 109.46937 * 29.99992 * 3 2 1 6 6 H 1.48494 * 109.47226 * 149.99613 * 3 2 1 7 7 C 1.38851 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00338 * 179.97438 * 7 2 1 9 9 N 1.36875 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.38586 * 119.99970 * 185.14048 * 9 7 2 11 11 C 1.40286 * 119.23546 * 354.24045 * 10 9 7 12 12 C 1.36207 * 119.87076 * 179.97438 * 11 10 9 13 13 C 1.41026 * 118.29736 * 0.02562 * 12 11 10 14 14 C 1.40300 * 121.22979 * 179.97438 * 13 12 11 15 15 C 1.36417 * 119.63497 * 180.02562 * 14 13 12 16 16 F 1.35104 * 119.59975 * 180.02562 * 15 14 13 17 17 C 1.39508 * 120.80394 * 359.97438 * 15 14 13 18 18 C 1.36102 * 121.00607 * 0.02562 * 17 15 14 19 19 C 1.40592 * 119.78954 * 359.97438 * 18 17 15 20 20 N 1.31813 * 119.23389 * 174.23089 * 10 9 7 21 21 H 0.96999 * 119.99579 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00446 * 5.14219 * 9 7 2 23 23 H 1.08003 * 120.06104 * 0.25224 * 11 10 9 24 24 H 1.08006 * 120.85248 * 179.97438 * 12 11 10 25 25 H 1.08001 * 120.18093 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.49493 * 180.02562 * 17 15 14 27 27 H 1.07997 * 120.10027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5469 1.4402 0.7001 7 6 2.0097 -1.2025 -0.0005 8 1 3.0896 -1.2025 -0.0010 9 7 1.3253 -2.3878 -0.0005 10 6 2.0140 -3.5856 0.1065 11 6 3.4168 -3.5731 0.0913 12 6 4.1068 -4.7428 0.1961 13 6 3.3749 -5.9422 0.3174 14 6 4.0228 -7.1816 0.4288 15 6 3.2827 -8.3217 0.5440 16 9 3.9074 -9.5148 0.6517 17 6 1.8886 -8.2706 0.5530 18 6 1.2298 -7.0844 0.4468 19 6 1.9593 -5.8886 0.3264 20 7 1.3359 -4.7102 0.2203 21 1 -0.4849 0.8401 -0.0004 22 1 0.3581 -2.3895 -0.0755 23 1 3.9485 -2.6374 0.0012 24 1 5.1867 -4.7516 0.1858 25 1 5.1016 -7.2327 0.4233 26 1 1.3235 -9.1863 0.6457 27 1 0.1501 -7.0619 0.4550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:04 Heat of formation + Delta-G solvation = 6.749890 kcal Electronic energy + Delta-G solvation = -14858.478111 eV Core-core repulsion = 12109.335159 eV Total energy + Delta-G solvation = -2749.142952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.071 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -48.29732 -39.81738 -36.98430 -34.58159 -32.68418 -31.85680 -29.45418 -28.15409 -25.09436 -23.40693 -21.92200 -21.54947 -18.61512 -17.64493 -16.88748 -16.46236 -15.37416 -15.11932 -15.05961 -14.45515 -13.82978 -13.67305 -13.55235 -13.04295 -12.65891 -12.31930 -12.05149 -11.80213 -11.55352 -11.18542 -10.78211 -10.60090 -10.56943 -9.97512 -9.79981 -8.78965 -8.44771 -7.89213 -7.00406 -6.89831 -4.05992 1.11636 1.65236 2.73986 2.95711 2.99693 3.03274 3.54306 3.76998 4.61356 4.66912 4.88631 5.10162 5.14236 5.25571 5.51969 5.65640 5.79876 5.98111 6.07909 6.35477 6.52938 6.69074 6.72165 6.77643 6.91177 7.06174 7.22961 7.36241 7.68451 8.33685 8.73617 9.01294 9.45774 10.24670 Molecular weight = 232.07amu Principal moments of inertia in cm(-1) A = 0.065296 B = 0.005469 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.715815 B = 5118.481059 C = 5532.690787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.309 4.309 8 H 0.109 0.891 9 N -0.505 5.505 10 C 0.363 3.637 11 C -0.187 4.187 12 C -0.049 4.049 13 C -0.177 4.177 14 C -0.091 4.091 15 C 0.014 3.986 16 F -0.158 7.158 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.211 3.789 20 N -0.599 5.599 21 H 0.282 0.718 22 H 0.408 0.592 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -6.286 0.277 8.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.179 4.179 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.440 4.440 8 H 0.127 0.873 9 N -0.109 5.109 10 C 0.111 3.889 11 C -0.210 4.210 12 C -0.073 4.073 13 C -0.184 4.184 14 C -0.111 4.111 15 C -0.007 4.007 16 F -0.138 7.138 17 C -0.136 4.136 18 C -0.134 4.134 19 C 0.079 3.921 20 N -0.326 5.326 21 H 0.093 0.907 22 H 0.244 0.756 23 H 0.149 0.851 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.340 -5.705 0.268 7.173 hybrid contribution 0.930 0.632 -0.022 1.125 sum 5.270 -5.073 0.246 7.319 Atomic orbital electron populations 1.69689 1.06273 1.29526 1.44774 1.25478 0.95833 1.00445 0.96120 0.85697 0.79204 0.79701 0.78902 1.19761 1.20278 1.18921 1.19886 0.93329 0.82128 1.48635 0.87321 1.40997 1.09661 1.01580 1.58693 1.18421 0.88246 0.86641 0.95577 1.21327 0.94026 0.98982 1.06698 1.20951 0.98848 0.91282 0.96268 1.18140 0.94207 0.93244 1.12837 1.20657 0.99218 0.90998 1.00234 1.17002 0.90731 0.80395 1.12603 1.91398 1.82925 1.44716 1.94715 1.20576 0.92345 0.98687 1.02016 1.20384 0.99763 0.89825 1.03443 1.18413 0.89095 0.91571 0.92992 1.67522 1.37899 0.96411 1.30795 0.90746 0.75613 0.85075 0.85790 0.85924 0.85789 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.77 13.06 55.49 0.72 -21.05 15 2 C 0.03 0.68 5.50 -17.45 -0.10 0.58 15 3 Si 0.94 18.10 29.55 -169.99 -5.02 13.08 15 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 7 C -0.31 -7.35 9.53 -15.07 -0.14 -7.49 15 8 H 0.11 2.39 5.61 -52.49 -0.29 2.09 15 9 N -0.51 -12.19 5.42 -11.10 -0.06 -12.25 15 10 C 0.36 8.30 7.59 -155.49 -1.18 7.12 15 11 C -0.19 -3.74 9.24 -39.54 -0.37 -4.11 15 12 C -0.05 -0.87 9.88 -39.26 -0.39 -1.26 15 13 C -0.18 -3.35 5.74 -106.76 -0.61 -3.96 15 14 C -0.09 -1.52 9.73 -39.46 -0.38 -1.91 15 15 C 0.01 0.23 7.24 -39.76 -0.29 -0.05 15 16 F -0.16 -2.57 17.25 2.25 0.04 -2.53 15 17 C -0.12 -1.85 9.92 -39.88 -0.40 -2.24 15 18 C -0.11 -2.01 9.98 -39.46 -0.39 -2.41 15 19 C 0.21 4.34 6.60 -84.84 -0.56 3.78 15 20 N -0.60 -13.69 10.37 -10.19 -0.11 -13.79 15 21 H 0.28 6.61 8.31 -40.82 -0.34 6.27 15 22 H 0.41 10.26 8.02 -40.82 -0.33 9.94 15 23 H 0.13 2.45 5.90 -52.48 -0.31 2.14 15 24 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 25 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.13 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -25.83 247.98 -7.25 -33.08 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -1.76 Total: 11.67 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -4.81 Total: -11.94 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.56 Total: -47.10 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -25.83 -7.25 -33.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.833 kcal (2) G-P(sol) polarization free energy of solvation -25.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds