Wall clock time and date at job start Sun Mar 29 2020 21:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00238 * 2 1 4 4 H 1.08006 * 120.00176 * 202.36300 * 3 2 1 5 5 C 1.38811 * 119.99970 * 22.36124 * 3 2 1 6 6 N 1.31625 * 119.99770 * 11.33275 * 5 3 2 7 7 Si 1.86797 * 120.00251 * 191.33027 * 5 3 2 8 8 H 1.48494 * 109.47197 * 59.99988 * 7 5 3 9 9 H 1.48503 * 109.47335 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47102 * 300.00327 * 7 5 3 11 11 C 1.46502 * 119.99804 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.46715 * 269.99212 * 11 2 1 13 13 N 1.28988 * 124.89920 * 90.00491 * 12 11 2 14 14 C 1.31834 * 117.13235 * 180.02562 * 13 12 11 15 15 C 1.33755 * 114.46079 * 359.97438 * 14 13 12 16 16 Cl 1.73603 * 126.04235 * 179.97438 * 15 14 13 17 17 S 1.70969 * 124.90167 * 270.03879 * 12 11 2 18 18 H 1.09007 * 109.46399 * 274.21512 * 1 2 3 19 19 H 1.09000 * 109.47467 * 34.20796 * 1 2 3 20 20 H 1.08998 * 109.47400 * 154.21480 * 1 2 3 21 21 H 0.96997 * 119.99690 * 179.97438 * 6 5 3 22 22 H 1.09004 * 109.47165 * 149.99261 * 11 2 1 23 23 H 1.08997 * 109.47549 * 29.99255 * 11 2 1 24 24 H 1.07994 * 122.76727 * 179.73049 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3559 5 6 1.5340 2.3428 0.4573 6 7 0.3843 2.2689 1.0939 7 14 2.3370 4.0047 0.1695 8 1 2.4919 4.2335 -1.2895 9 1 1.4854 5.0733 0.7510 10 1 3.6724 4.0283 0.8187 11 6 2.1975 -1.2688 -0.0006 12 6 2.4487 -1.7043 1.4201 13 7 1.6556 -2.4465 2.1157 14 6 2.0275 -2.7345 3.3473 15 6 3.2011 -2.2049 3.7096 16 17 3.9717 -2.3897 5.2542 17 16 3.8257 -1.2851 2.3427 18 1 -0.3632 0.0755 1.0250 19 1 -0.3634 0.8499 -0.5777 20 1 -0.3634 -0.9253 -0.4470 21 1 -0.0458 3.0773 1.4138 22 1 3.1498 -1.1383 -0.5145 23 1 1.6084 -2.0282 -0.5146 24 1 1.4317 -3.3442 4.0103 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306438145.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:05 Heat of formation + Delta-G solvation = 45.182087 kcal Electronic energy + Delta-G solvation = -12040.592057 eV Core-core repulsion = 9721.062882 eV Total energy + Delta-G solvation = -2319.529175 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56937 -37.87438 -37.42765 -33.68635 -31.28764 -28.53883 -27.85004 -25.29399 -23.12951 -20.94223 -19.20934 -18.75752 -17.10883 -16.73396 -15.95634 -15.51594 -15.16357 -14.93064 -14.75048 -13.65447 -13.17217 -13.13187 -13.06473 -12.73919 -12.58366 -12.26543 -12.08820 -11.93802 -11.78974 -10.75110 -10.56741 -10.13296 -9.74685 -8.95691 -7.89858 -5.38443 -0.35023 0.02174 0.77129 1.24368 1.49063 1.50620 1.56812 1.82446 2.48837 3.23734 3.42255 3.69886 4.23135 4.31844 4.59477 4.79857 4.86095 5.12892 5.29517 5.60295 5.69054 6.22775 6.77939 7.05046 7.72291 8.17622 9.12519 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.031865 B = 0.008462 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.483898 B = 3308.223235 C = 3718.703648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.592 5.592 3 C -0.268 4.268 4 H 0.085 0.915 5 C -0.045 4.045 6 N -0.931 5.931 7 Si 0.969 3.031 8 H -0.272 1.272 9 H -0.298 1.298 10 H -0.272 1.272 11 C 0.207 3.793 12 C 0.052 3.948 13 N -0.501 5.501 14 C 0.052 3.948 15 C -0.223 4.223 16 Cl 0.003 6.997 17 S 0.168 5.832 18 H -0.004 1.004 19 H 0.028 0.972 20 H 0.032 0.968 21 H 0.250 0.750 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -8.346 2.816 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.312 5.312 3 C -0.398 4.398 4 H 0.103 0.897 5 C -0.241 4.241 6 N -0.576 5.576 7 Si 0.796 3.204 8 H -0.197 1.197 9 H -0.224 1.224 10 H -0.198 1.198 11 C 0.077 3.923 12 C -0.228 4.228 13 N -0.217 5.217 14 C -0.103 4.103 15 C -0.372 4.372 16 Cl 0.031 6.969 17 S 0.421 5.579 18 H 0.015 0.985 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.169 -7.791 2.519 10.883 hybrid contribution -0.525 0.555 1.171 1.398 sum 6.644 -7.236 3.690 10.494 Atomic orbital electron populations 1.20583 0.82066 0.96478 0.97433 1.44434 1.02510 1.01057 1.83218 1.19632 0.98952 0.85615 1.35633 0.89729 1.25900 0.98120 1.02226 0.97897 1.70264 1.19015 1.27926 1.40415 0.85320 0.77772 0.79023 0.78267 1.19722 1.22443 1.19779 1.20098 0.98538 0.88118 0.85560 1.29416 0.92698 0.95460 1.05185 1.66475 1.31582 1.17398 1.06248 1.22155 0.94024 1.01366 0.92728 1.26920 1.02612 1.11823 0.95801 1.98321 1.79714 1.96393 1.22458 1.83954 1.23221 1.47029 1.03669 0.98514 0.95331 0.94916 0.94084 0.89016 0.88978 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 9.01 127.77 1.15 9.96 14 2 N -0.59 -28.30 2.91 -731.29 -2.13 -30.43 14 3 C -0.27 -13.73 9.67 84.03 0.81 -12.91 14 4 H 0.09 4.07 7.84 -2.91 -0.02 4.05 14 5 C -0.04 -2.41 5.13 84.86 0.44 -1.97 14 6 N -0.93 -53.88 10.59 21.65 0.23 -53.65 14 7 Si 0.97 43.12 29.57 68.60 2.03 45.15 14 8 H -0.27 -11.59 7.11 99.48 0.71 -10.88 14 9 H -0.30 -13.60 7.11 99.48 0.71 -12.89 14 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 14 11 C 0.21 7.97 6.29 85.63 0.54 8.51 14 12 C 0.05 2.02 6.97 88.53 0.62 2.64 14 13 N -0.50 -19.60 10.54 -191.36 -2.02 -21.62 14 14 C 0.05 1.75 11.32 83.67 0.95 2.70 14 15 C -0.22 -7.27 7.21 66.80 0.48 -6.79 14 16 Cl 0.00 0.08 29.31 -2.72 -0.08 0.00 14 17 S 0.17 5.85 23.18 -56.49 -1.31 4.54 14 18 H 0.00 -0.20 7.42 -2.38 -0.02 -0.22 14 19 H 0.03 1.48 7.19 -2.39 -0.02 1.47 14 20 H 0.03 1.38 7.84 -2.39 -0.02 1.36 14 21 H 0.25 14.17 8.31 -92.71 -0.77 13.40 14 22 H 0.09 3.11 8.03 -2.39 -0.02 3.09 14 23 H 0.09 3.20 7.86 -2.39 -0.02 3.18 14 24 H 0.20 5.37 8.06 -2.91 -0.02 5.35 14 Total: -1.00 -59.84 245.57 2.92 -56.92 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: 1.21 Total: -3.05 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.98 Total: 2.14 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.92 Total: -105.70 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.31 Total: 4.54 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Total: -59.84 2.92 -56.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306438145.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.105 kcal (2) G-P(sol) polarization free energy of solvation -59.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds