Wall clock time and date at job start Sun Mar 29 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47458 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47081 * 30.00410 * 3 2 1 6 6 H 1.48500 * 109.46880 * 150.00124 * 3 2 1 7 7 C 1.37874 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47109 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.42098 * 109.46967 * 63.61348 * 11 10 9 13 13 C 1.81404 * 102.99843 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.57030 * 64.84404 * 13 11 10 15 15 C 1.53179 * 109.51956 * 184.99907 * 13 11 10 16 16 C 1.53177 * 109.10692 * 176.93050 * 15 13 11 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 13 18 18 O 1.42903 * 109.41633 * 57.61251 * 17 16 15 19 19 C 1.42901 * 114.09356 * 298.84001 * 18 17 16 20 20 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47352 * 60.00597 * 9 7 2 22 22 H 1.09004 * 109.47414 * 299.99893 * 9 7 2 23 23 H 1.09005 * 109.47110 * 60.00259 * 10 9 7 24 24 H 1.09002 * 109.47502 * 300.00338 * 10 9 7 25 25 H 1.09002 * 109.54484 * 57.01846 * 15 13 11 26 26 H 1.08999 * 109.54222 * 296.84012 * 15 13 11 27 27 H 1.09004 * 109.52253 * 62.88396 * 16 15 13 28 28 H 1.08999 * 109.52129 * 183.00522 * 16 15 13 29 29 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 30 30 H 1.09000 * 109.48011 * 297.61575 * 17 16 15 31 31 H 1.09007 * 109.48051 * 181.14148 * 19 18 17 32 32 H 1.09003 * 109.48335 * 301.16370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 16 5.8356 -2.6364 -0.0022 12 8 6.3091 -2.0420 1.1984 13 6 6.2436 -4.4040 -0.0044 14 1 5.9004 -4.8567 -0.9347 15 6 7.7602 -4.5793 0.1212 16 6 8.0877 -6.0738 0.1956 17 6 7.3332 -6.6955 1.3737 18 8 5.9312 -6.4717 1.2112 19 6 5.5601 -5.0920 1.1825 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.6579 -3.1497 -0.8925 24 1 3.6585 -3.1510 0.8875 25 1 8.1108 -4.0836 1.0265 26 1 8.2511 -4.1412 -0.7478 27 1 7.7817 -6.5603 -0.7306 28 1 9.1602 -6.2049 0.3388 29 1 7.5289 -7.7673 1.4057 30 1 7.6693 -6.2367 2.3035 31 1 4.4784 -5.0086 1.0768 32 1 5.8727 -4.6121 2.1099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308426851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:35 Heat of formation + Delta-G solvation = -100.383245 kcal Electronic energy + Delta-G solvation = -14516.827956 eV Core-core repulsion = 11989.650868 eV Total energy + Delta-G solvation = -2527.177088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.092 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20740 -35.30223 -33.80090 -33.66779 -31.50040 -31.07481 -25.94638 -24.90608 -23.75735 -21.02857 -20.25930 -17.40773 -16.96223 -16.37524 -16.22170 -15.15979 -14.92901 -14.50951 -14.24506 -14.01373 -13.51637 -13.22602 -12.78189 -12.59665 -12.44523 -11.73383 -11.46142 -11.30126 -11.21927 -11.03121 -10.61924 -10.52773 -10.26887 -9.92683 -9.73048 -9.42419 -9.12249 -8.59515 -7.82132 -6.09607 -4.09244 1.82253 2.96425 3.28012 3.36645 3.42169 3.83780 4.10252 4.41308 4.58476 4.66779 4.74854 4.85644 5.14086 5.23448 5.32130 5.43008 5.55614 5.59669 5.70144 5.78792 5.81932 5.88890 5.94251 6.10879 6.57354 7.02003 7.05676 7.17812 7.67494 8.46417 8.93596 9.51368 11.03400 Molecular weight = 232.09amu Principal moments of inertia in cm(-1) A = 0.052430 B = 0.006022 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.913882 B = 4648.831150 C = 4991.129927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.004 3.996 10 C -0.407 4.407 11 S 1.219 4.781 12 O -0.850 6.850 13 C -0.452 4.452 14 H 0.128 0.872 15 C -0.098 4.098 16 C -0.150 4.150 17 C 0.057 3.943 18 O -0.379 6.379 19 C 0.068 3.932 20 H 0.264 0.736 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.276 -10.088 -3.533 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.035 4.035 10 C -0.547 4.547 11 S 1.419 4.581 12 O -0.845 6.845 13 C -0.567 4.567 14 H 0.146 0.854 15 C -0.136 4.136 16 C -0.189 4.189 17 C -0.019 4.019 18 O -0.298 6.298 19 C -0.009 4.009 20 H 0.074 0.926 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.131 0.869 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.649 -9.363 -3.520 19.422 hybrid contribution -0.443 0.011 1.777 1.832 sum 16.206 -9.353 -1.742 18.792 Atomic orbital electron populations 1.69896 1.06286 1.27058 1.50670 1.25008 0.94759 0.99166 0.94371 0.86864 0.80667 0.83654 0.78815 1.19798 1.21135 1.18772 1.21023 0.88700 0.94635 1.51432 0.90822 1.19246 0.98210 0.88940 0.97085 1.27435 1.14182 1.06112 1.06967 1.70200 0.90317 0.84666 1.12904 1.93090 1.74774 1.65613 1.51020 1.28388 1.01845 1.21458 1.04992 0.85381 1.21234 0.92650 0.96729 1.03003 1.22125 1.00393 0.96265 1.00087 1.22571 0.81761 1.00743 0.96870 1.87922 1.23196 1.24739 1.93929 1.22754 1.00014 0.82266 0.95875 0.92574 0.95964 0.95878 0.86935 0.90129 0.91444 0.90352 0.90768 0.90867 0.89040 0.93478 0.88146 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.02 16 10 C -0.41 -7.44 5.29 37.16 0.20 -7.25 16 11 S 1.22 17.75 12.68 -107.50 -1.36 16.39 16 12 O -0.85 -17.47 18.13 -35.23 -0.64 -18.11 16 13 C -0.45 -5.49 2.92 -26.49 -0.08 -5.56 16 14 H 0.13 1.28 8.14 -51.92 -0.42 0.86 16 15 C -0.10 -1.05 5.30 -26.55 -0.14 -1.19 16 16 C -0.15 -1.41 6.14 -26.59 -0.16 -1.58 16 17 C 0.06 0.63 6.84 37.20 0.25 0.89 16 18 O -0.38 -5.41 10.77 -35.23 -0.38 -5.79 16 19 C 0.07 0.99 5.83 37.30 0.22 1.20 16 20 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 21 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 22 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 23 H 0.11 1.79 8.14 -51.92 -0.42 1.36 16 24 H 0.08 1.56 6.98 -51.92 -0.36 1.19 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.46 6.70 -51.92 -0.35 1.11 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 273.28 15.07 4.12 4.12 Total: -1.00 -35.61 273.28 -7.28 -42.89 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.87 Total: -2.89 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -0.26 Total: -26.62 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.02 Total: -23.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 17.75 SS G_CDS: -1.36 Total: 16.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.61 -7.28 -42.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308426851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.495 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds