Wall clock time and date at job start Sun Mar 29 2020 22:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47458 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47081 * 30.00410 * 3 2 1 6 6 H 1.48500 * 109.46880 * 150.00124 * 3 2 1 7 7 C 1.37874 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00160 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99956 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47109 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47165 * 180.02562 * 10 9 7 12 12 O 1.42098 * 109.46967 * 63.61348 * 11 10 9 13 13 C 1.81404 * 102.99843 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.57030 * 64.84404 * 13 11 10 15 15 C 1.53179 * 109.51956 * 184.99907 * 13 11 10 16 16 C 1.53177 * 109.10692 * 176.93050 * 15 13 11 17 17 C 1.53091 * 109.16264 * 302.97408 * 16 15 13 18 18 O 1.42903 * 109.41633 * 57.61251 * 17 16 15 19 19 C 1.42901 * 114.09356 * 298.84001 * 18 17 16 20 20 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.47352 * 60.00597 * 9 7 2 22 22 H 1.09004 * 109.47414 * 299.99893 * 9 7 2 23 23 H 1.09005 * 109.47110 * 60.00259 * 10 9 7 24 24 H 1.09002 * 109.47502 * 300.00338 * 10 9 7 25 25 H 1.09002 * 109.54484 * 57.01846 * 15 13 11 26 26 H 1.08999 * 109.54222 * 296.84012 * 15 13 11 27 27 H 1.09004 * 109.52253 * 62.88396 * 16 15 13 28 28 H 1.08999 * 109.52129 * 183.00522 * 16 15 13 29 29 H 1.09000 * 109.47857 * 177.59315 * 17 16 15 30 30 H 1.09000 * 109.48011 * 297.61575 * 17 16 15 31 31 H 1.09007 * 109.48051 * 181.14148 * 19 18 17 32 32 H 1.09003 * 109.48335 * 301.16370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 16 5.8356 -2.6364 -0.0022 12 8 6.3091 -2.0420 1.1984 13 6 6.2436 -4.4040 -0.0044 14 1 5.9004 -4.8567 -0.9347 15 6 7.7602 -4.5793 0.1212 16 6 8.0877 -6.0738 0.1956 17 6 7.3332 -6.6955 1.3737 18 8 5.9312 -6.4717 1.2112 19 6 5.5601 -5.0920 1.1825 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6804 0.8888 22 1 3.8745 -0.6799 -0.8912 23 1 3.6579 -3.1497 -0.8925 24 1 3.6585 -3.1510 0.8875 25 1 8.1108 -4.0836 1.0265 26 1 8.2511 -4.1412 -0.7478 27 1 7.7817 -6.5603 -0.7306 28 1 9.1602 -6.2049 0.3388 29 1 7.5289 -7.7673 1.4057 30 1 7.6693 -6.2367 2.3035 31 1 4.4784 -5.0086 1.0768 32 1 5.8727 -4.6121 2.1099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308426851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:33 Heat of formation + Delta-G solvation = -127.501754 kcal Electronic energy + Delta-G solvation = -14518.003903 eV Core-core repulsion = 11989.650868 eV Total energy + Delta-G solvation = -2528.353035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.092 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.19148 -36.78480 -35.72670 -34.67271 -33.31244 -32.21611 -27.69268 -26.06996 -24.72392 -22.80416 -21.26397 -19.20891 -18.46095 -17.46170 -17.29853 -16.47553 -16.16142 -15.92055 -15.76449 -15.51220 -14.78708 -14.60827 -14.22904 -13.90529 -13.65478 -13.37012 -12.96862 -12.64490 -12.35514 -12.21876 -12.14230 -12.01284 -11.75223 -11.54246 -11.45053 -10.79510 -10.77669 -10.56474 -9.14802 -8.32494 -6.37591 0.59810 1.33721 1.37661 1.48965 1.71810 2.34041 2.81941 2.88652 3.02548 3.58864 3.67634 3.94635 4.03222 4.12199 4.21202 4.35925 4.41439 4.50720 4.64238 4.79023 4.83870 4.88786 5.03299 5.04973 5.29058 5.31039 5.33114 5.57738 6.05479 6.23796 6.69605 7.27116 8.84006 Molecular weight = 232.09amu Principal moments of inertia in cm(-1) A = 0.052430 B = 0.006022 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.913882 B = 4648.831150 C = 4991.129927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.941 3.059 4 H -0.245 1.245 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.036 0.964 9 C 0.000 4.000 10 C -0.420 4.420 11 S 1.293 4.707 12 O -0.909 6.909 13 C -0.440 4.440 14 H 0.164 0.836 15 C -0.105 4.105 16 C -0.143 4.143 17 C 0.044 3.956 18 O -0.395 6.395 19 C 0.064 3.936 20 H 0.268 0.732 21 H 0.001 0.999 22 H 0.051 0.949 23 H 0.137 0.863 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.953 -10.438 -5.276 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.169 1.169 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.038 4.038 10 C -0.557 4.557 11 S 1.495 4.505 12 O -0.905 6.905 13 C -0.557 4.557 14 H 0.181 0.819 15 C -0.143 4.143 16 C -0.182 4.182 17 C -0.033 4.033 18 O -0.315 6.315 19 C -0.014 4.014 20 H 0.077 0.923 21 H 0.019 0.981 22 H 0.070 0.930 23 H 0.155 0.845 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 19.310 -9.697 -5.269 22.241 hybrid contribution -1.250 -0.094 2.358 2.670 sum 18.059 -9.790 -2.911 20.748 Atomic orbital electron populations 1.70050 1.08227 1.28280 1.52384 1.25992 0.95623 1.03446 0.94012 0.85798 0.79125 0.78466 0.80281 1.16931 1.21037 1.18205 1.21410 0.91546 0.93295 1.50731 0.94589 1.19188 0.94986 0.92495 0.97178 1.27499 1.18085 1.02870 1.07263 1.69455 0.85628 0.85439 1.09985 1.92973 1.75001 1.69144 1.53400 1.28326 1.03309 1.18475 1.05612 0.81879 1.21391 0.91145 0.98159 1.03634 1.22118 1.01624 0.94732 0.99704 1.22897 0.80338 1.02395 0.97620 1.87902 1.25418 1.24071 1.94060 1.22694 0.99882 0.82953 0.95854 0.92349 0.98064 0.93048 0.84478 0.92211 0.93520 0.86917 0.89357 0.88403 0.86813 0.94230 0.88987 0.95412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.44 0.30 -59.56 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.94 44.35 27.47 68.60 1.88 46.23 16 4 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 9 C 0.00 0.00 4.05 29.85 0.12 0.12 16 10 C -0.42 -15.15 5.29 71.98 0.38 -14.77 16 11 S 1.29 35.33 12.68 -56.49 -0.72 34.62 16 12 O -0.91 -36.94 18.13 -148.98 -2.70 -39.64 16 13 C -0.44 -9.50 2.92 30.75 0.09 -9.41 16 14 H 0.16 2.51 8.14 -2.39 -0.02 2.50 16 15 C -0.10 -1.90 5.30 30.71 0.16 -1.74 16 16 C -0.14 -2.13 6.14 30.68 0.19 -1.95 16 17 C 0.04 0.86 6.84 72.01 0.49 1.35 16 18 O -0.40 -10.74 10.77 -148.98 -1.60 -12.35 16 19 C 0.06 1.81 5.83 72.08 0.42 2.23 16 20 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 21 H 0.00 0.05 7.20 -2.39 -0.02 0.03 16 22 H 0.05 2.10 7.57 -2.38 -0.02 2.09 16 23 H 0.14 4.16 8.14 -2.39 -0.02 4.14 16 24 H 0.06 2.37 6.98 -2.39 -0.02 2.36 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 2.70 6.70 -2.38 -0.02 2.68 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -80.04 273.28 0.76 -79.28 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.03 Total: 5.27 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 2.57 Total: -53.85 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.30 Total: -59.56 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -4.30 Total: -51.98 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Atomic # 16 Polarization: 35.33 SS G_CDS: -0.72 Total: 34.62 kcal Total: -80.04 0.76 -79.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308426851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.219 kcal (2) G-P(sol) polarization free energy of solvation -80.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds