Wall clock time and date at job start Sun Mar 29 2020 21:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 112.90577 * 2 1 4 4 C 1.53955 * 113.61269 * 228.67803 * 2 1 3 5 5 C 1.53787 * 87.10959 * 270.83929 * 4 2 1 6 6 C 1.53777 * 87.08213 * 334.63967 * 5 4 2 7 7 H 1.09000 * 113.61271 * 270.79871 * 6 5 4 8 8 N 1.46498 * 113.61770 * 139.98140 * 6 5 4 9 9 C 1.39680 * 120.00166 * 105.86196 * 8 6 5 10 10 C 1.39334 * 119.95017 * 0.02562 * 9 8 6 11 11 C 1.38481 * 120.42558 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.32183 * 0.02562 * 11 10 9 13 13 C 1.40749 * 119.89571 * 359.97438 * 12 11 10 14 14 C 1.41408 * 120.21028 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99946 * 24.45734 * 14 13 12 16 16 C 1.39929 * 119.99927 * 204.46524 * 14 13 12 17 17 N 1.30831 * 120.00459 * 17.87180 * 16 14 13 18 18 Si 1.86803 * 119.99649 * 197.87575 * 16 14 13 19 19 H 1.48497 * 109.47028 * 89.99979 * 18 16 14 20 20 H 1.48499 * 109.46790 * 209.99617 * 18 16 14 21 21 H 1.48493 * 109.47128 * 329.99567 * 18 16 14 22 22 C 1.38279 * 119.95083 * 179.97438 * 9 8 6 23 23 H 1.09006 * 109.46784 * 288.74311 * 1 2 3 24 24 H 1.08989 * 109.47142 * 48.74479 * 1 2 3 25 25 H 1.08997 * 109.46787 * 168.74999 * 1 2 3 26 26 H 1.08996 * 113.53847 * 156.29423 * 4 2 1 27 27 H 1.08995 * 113.66601 * 25.40649 * 4 2 1 28 28 H 1.09003 * 113.61200 * 220.08884 * 5 4 2 29 29 H 1.09006 * 113.69132 * 89.20021 * 5 4 2 30 30 H 0.97003 * 119.99837 * 285.86303 * 8 6 5 31 31 H 1.08004 * 119.78982 * 359.69758 * 10 9 8 32 32 H 1.07992 * 119.83964 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.05218 * 180.02562 * 12 11 10 34 34 H 0.96994 * 120.00410 * 180.02562 * 17 16 14 35 35 H 1.07993 * 120.16356 * 0.04412 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1467 -0.9314 -1.0594 5 6 2.0950 -2.0438 0.0012 6 6 2.1461 -0.9291 1.0593 7 1 3.1586 -0.6491 1.3500 8 7 1.2705 -1.1705 2.2088 9 6 1.8177 -1.5555 3.4349 10 6 3.1965 -1.7092 3.5637 11 6 3.7496 -2.0900 4.7749 12 6 2.9419 -2.3215 5.8657 13 6 1.5473 -2.1703 5.7507 14 6 0.7116 -2.4069 6.8666 15 1 1.1075 -2.3141 7.8671 16 6 -0.6283 -2.7615 6.6745 17 7 -1.0256 -3.2126 5.5124 18 14 -1.8500 -2.5906 8.0773 19 1 -2.4610 -1.2377 8.0394 20 1 -2.9130 -3.6179 7.9358 21 1 -1.1473 -2.7804 9.3715 22 6 0.9903 -1.7825 4.5193 23 1 -0.3633 0.3302 0.9732 24 1 -0.3633 0.6776 -0.7725 25 1 -0.3633 -1.0079 -0.2005 26 1 3.1594 -0.6511 -1.3490 27 1 1.4957 -1.1130 -1.9145 28 1 2.9748 -2.6874 0.0021 29 1 1.1603 -2.6047 0.0025 30 1 0.3107 -1.0629 2.1184 31 1 3.8378 -1.5345 2.7124 32 1 4.8195 -2.2067 4.8640 33 1 3.3779 -2.6180 6.8083 34 1 -1.9544 -3.4580 5.3791 35 1 -0.0785 -1.6635 4.4207 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:54 Heat of formation + Delta-G solvation = 31.487568 kcal Electronic energy + Delta-G solvation = -15756.965269 eV Core-core repulsion = 13333.614334 eV Total energy + Delta-G solvation = -2423.350935 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.39865 -37.27059 -33.93654 -32.67913 -29.49408 -29.19851 -27.72099 -25.17347 -23.87120 -23.58013 -21.02154 -19.94988 -18.24480 -17.20883 -16.09786 -15.61751 -15.08967 -14.63551 -14.37685 -13.33931 -13.07625 -12.78777 -12.47990 -12.24824 -12.13941 -12.01832 -11.99468 -11.46033 -11.09440 -11.01299 -10.69848 -10.58657 -10.38602 -10.10831 -9.98630 -9.54195 -9.37617 -9.17785 -8.66634 -7.26630 -6.69061 -6.09459 -4.27236 2.89992 3.12056 3.15852 3.27523 3.37620 4.00637 4.40543 4.69428 4.72103 4.81842 5.01483 5.20272 5.54866 5.70613 5.75286 5.82855 5.87420 5.92668 6.02129 6.17226 6.27762 6.32273 6.46087 6.55405 6.68037 6.94214 7.16592 7.18606 7.43470 7.50138 7.87284 8.01042 8.16877 8.22348 8.54320 8.78158 8.89462 9.05679 9.17297 10.29574 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.030610 B = 0.006845 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.515143 B = 4089.432572 C = 4773.744033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 H 0.073 0.927 4 C -0.137 4.137 5 C -0.158 4.158 6 C 0.146 3.854 7 H 0.099 0.901 8 N -0.747 5.747 9 C 0.215 3.785 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.259 4.259 13 C 0.139 3.861 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.263 1.263 22 C -0.232 4.232 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.390 0.610 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.277 0.723 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 4.057 -9.275 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 H 0.092 0.908 4 C -0.175 4.175 5 C -0.198 4.198 6 C 0.038 3.962 7 H 0.117 0.883 8 N -0.379 5.379 9 C 0.116 3.884 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.135 3.865 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.419 5.419 18 Si 0.729 3.271 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.256 4.256 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.000 3.964 -9.463 10.308 hybrid contribution -0.923 -0.042 0.495 1.048 sum 0.077 3.922 -8.968 9.789 Atomic orbital electron populations 1.21518 0.94070 1.01864 1.01838 1.22826 0.96266 0.98606 0.96729 0.90813 1.22827 1.00671 0.97426 0.96618 1.23532 1.02215 0.97410 0.96635 1.22153 0.95313 0.94206 0.84533 0.88314 1.44502 1.07455 1.78108 1.07847 1.17697 0.92222 0.93533 0.84913 1.19909 0.92573 1.21915 0.97856 1.20284 0.96737 0.98206 0.93274 1.20854 0.94305 1.15171 0.97598 1.17329 0.90899 0.86047 0.92181 1.19556 0.93996 1.41833 0.94140 0.90610 1.25871 0.99221 0.92351 0.96493 1.69871 1.17717 1.30145 1.24121 0.86385 0.79868 0.78744 0.82096 1.19430 1.20486 1.18694 1.20723 0.98657 1.13355 0.92840 0.91938 0.92680 0.92347 0.90411 0.91548 0.91817 0.90141 0.77479 0.89609 0.89705 0.89450 0.91253 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.59 37.16 0.32 -1.33 16 2 C -0.12 -1.60 4.53 -89.71 -0.41 -2.01 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.14 -1.59 7.65 -25.82 -0.20 -1.79 16 5 C -0.16 -2.25 7.53 -25.92 -0.20 -2.45 16 6 C 0.15 2.31 3.89 -67.12 -0.26 2.05 16 7 H 0.10 1.63 6.19 -51.93 -0.32 1.30 16 8 N -0.75 -14.49 5.42 -51.43 -0.28 -14.77 16 9 C 0.21 5.10 6.64 -83.86 -0.56 4.55 16 10 C -0.30 -6.95 9.27 -39.08 -0.36 -7.31 16 11 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 12 C -0.26 -6.67 9.79 -38.83 -0.38 -7.05 16 13 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 14 C -0.47 -12.75 9.05 -37.74 -0.34 -13.09 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 16 C 0.08 2.01 5.14 -17.34 -0.09 1.92 16 17 N -0.79 -20.93 10.96 55.55 0.61 -20.32 16 18 Si 0.90 19.12 29.60 -169.99 -5.03 14.09 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.23 -6.16 8.53 -38.67 -0.33 -6.49 16 23 H 0.06 0.82 7.07 -51.93 -0.37 0.45 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.72 7.35 -51.93 -0.38 0.33 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 30 H 0.39 7.27 6.62 -40.82 -0.27 7.00 16 31 H 0.09 1.79 6.06 -52.48 -0.32 1.47 16 32 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -28.10 283.60 -9.11 -37.21 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.89 Total: 11.23 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -3.79 Total: -31.71 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.33 Total: -35.09 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.10 -9.11 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.700 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds