Wall clock time and date at job start Sun Mar 29 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.55245 * 2 1 4 4 C 1.53006 * 117.50028 * 214.33257 * 2 1 3 5 5 C 1.53001 * 60.00131 * 252.51031 * 4 2 1 6 6 H 1.08993 * 117.49435 * 107.48973 * 5 4 2 7 7 C 1.53001 * 117.49838 * 252.51150 * 5 4 2 8 8 N 1.46502 * 109.46860 * 243.62403 * 7 5 4 9 9 C 1.38857 * 119.99734 * 180.02562 * 8 7 5 10 10 C 1.39570 * 119.84210 * 359.71938 * 9 8 7 11 11 C 1.36343 * 120.15498 * 179.72211 * 10 9 8 12 12 C 1.40883 * 119.83686 * 0.55647 * 11 10 9 13 13 C 1.41138 * 120.14990 * 179.70237 * 12 11 10 14 14 H 1.08004 * 119.99900 * 155.11375 * 13 12 11 15 15 C 1.39862 * 120.00269 * 335.10376 * 13 12 11 16 16 N 1.30904 * 120.00161 * 342.13615 * 15 13 12 17 17 Si 1.86796 * 120.00058 * 162.13430 * 15 13 12 18 18 H 1.48500 * 109.47612 * 94.65264 * 17 15 13 19 19 H 1.48504 * 109.47220 * 214.65443 * 17 15 13 20 20 H 1.48502 * 109.47170 * 334.65326 * 17 15 13 21 21 C 1.40883 * 119.69432 * 359.71749 * 12 11 10 22 22 C 1.36345 * 119.83278 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.46907 * 154.27390 * 1 2 3 24 24 H 1.08997 * 109.47087 * 34.28025 * 1 2 3 25 25 H 1.08998 * 109.47044 * 274.27203 * 1 2 3 26 26 H 1.08996 * 117.49781 * 0.02562 * 4 2 1 27 27 H 1.09005 * 117.49928 * 144.99471 * 4 2 1 28 28 H 1.09004 * 109.47154 * 3.61894 * 7 5 4 29 29 H 1.08997 * 109.47188 * 123.62156 * 7 5 4 30 30 H 0.96995 * 120.00163 * 359.97438 * 8 7 5 31 31 H 1.07995 * 119.92003 * 359.97438 * 10 9 8 32 32 H 1.08004 * 120.07555 * 180.27888 * 11 10 9 33 33 H 0.96999 * 120.00426 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.08435 * 180.02562 * 21 12 11 35 35 H 1.08001 * 119.92017 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1213 0.7646 6 1 1.6113 -1.8590 1.2675 7 6 3.5490 -0.7765 1.4712 8 7 4.0086 -1.9355 2.2405 9 6 5.1869 -1.8607 2.9712 10 6 5.9339 -0.6818 2.9658 11 6 7.0889 -0.5995 3.6856 12 6 7.5339 -1.7121 4.4266 13 6 8.7318 -1.6362 5.1690 14 1 8.8798 -2.2810 6.0227 15 6 9.7274 -0.7262 4.7990 16 7 9.7225 -0.2025 3.5994 17 14 11.0642 -0.2582 6.0169 18 1 12.2552 -1.1180 5.7994 19 1 11.4384 1.1652 5.8184 20 1 10.5618 -0.4495 7.4012 21 6 6.7777 -2.9007 4.4228 22 6 5.6218 -2.9670 3.7026 23 1 -0.3633 -0.9258 -0.4461 24 1 -0.3633 0.8491 -0.5788 25 1 -0.3633 0.0766 1.0248 26 1 1.6113 -1.8578 -1.2693 27 1 3.1714 -0.8746 -1.2690 28 1 4.3022 -0.5111 0.7293 29 1 3.3890 0.0660 2.1440 30 1 3.4894 -2.7548 2.2399 31 1 5.5941 0.1686 2.3934 32 1 7.6636 0.3150 3.6841 33 1 10.4131 0.4283 3.3426 34 1 7.1127 -3.7573 4.9889 35 1 5.0412 -3.8777 3.6984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336769842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:43 Heat of formation + Delta-G solvation = 35.254193 kcal Electronic energy + Delta-G solvation = -15092.549080 eV Core-core repulsion = 12669.361478 eV Total energy + Delta-G solvation = -2423.187602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -38.48162 -37.50762 -34.67957 -32.79913 -29.58039 -29.40814 -28.25349 -25.91094 -23.77238 -21.62994 -20.95263 -20.13367 -19.82709 -17.17189 -16.18359 -15.48380 -14.95578 -14.35349 -14.27197 -13.78522 -13.41680 -13.24855 -12.67341 -12.51785 -12.28827 -11.97771 -11.72265 -11.51150 -11.23907 -11.11083 -10.99534 -10.83619 -10.47626 -10.03630 -9.87093 -9.64716 -9.25381 -9.16046 -8.47342 -7.45970 -6.60837 -6.34491 -3.99974 2.94131 3.13231 3.16889 3.22041 3.38172 3.65443 4.08081 4.28264 4.73097 4.78307 4.82580 4.97102 5.19215 5.41608 5.56985 5.63377 5.74458 5.84685 5.87672 5.90306 6.10794 6.16304 6.30208 6.32654 6.36816 6.97232 6.97775 7.23622 7.39188 7.59306 7.72595 7.88026 8.18612 8.33072 8.53516 8.74988 8.84197 9.09351 9.18884 10.40726 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.053148 B = 0.004575 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.708946 B = 6118.101086 C = 6437.842776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.152 4.152 3 H 0.105 0.895 4 C -0.175 4.175 5 C -0.156 4.156 6 H 0.105 0.895 7 C 0.169 3.831 8 N -0.760 5.760 9 C 0.092 3.908 10 C -0.165 4.165 11 C -0.124 4.124 12 C 0.074 3.926 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.809 5.809 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.186 4.186 22 C -0.160 4.160 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.384 0.616 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 0.958 -5.704 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 H 0.123 0.877 4 C -0.212 4.212 5 C -0.174 4.174 6 H 0.123 0.877 7 C 0.044 3.956 8 N -0.396 5.396 9 C -0.005 4.005 10 C -0.186 4.186 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.206 4.206 22 C -0.182 4.182 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.216 0.784 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.640 1.308 -5.916 13.122 hybrid contribution 0.542 -0.084 0.383 0.669 sum -11.098 1.224 -5.534 12.461 Atomic orbital electron populations 1.21351 0.92944 1.01713 1.01817 1.22368 0.95089 0.94806 1.04826 0.87731 1.23218 1.02555 1.01164 0.94223 1.22589 0.99077 1.01874 0.93877 0.87728 1.20543 0.91764 0.89687 0.93618 1.43839 1.25704 1.14186 1.55856 1.17368 0.88804 0.95505 0.98795 1.20092 0.97920 0.95688 1.04949 1.20927 0.94693 0.99117 0.99669 1.17487 0.92639 0.90213 0.92558 1.19361 0.99834 1.18234 1.12477 0.90972 1.25788 0.98626 0.94770 0.94833 1.69860 1.32108 1.24407 1.17226 0.86417 0.80697 0.78261 0.81943 1.19886 1.20303 1.18680 1.20546 0.97728 0.97397 1.04970 1.19810 0.99147 0.96024 1.03221 0.92704 0.92252 0.92208 0.89048 0.88674 0.93416 0.93258 0.78389 0.89474 0.86439 0.91379 0.89055 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.19 37.16 0.38 -0.67 16 2 C -0.15 -1.59 6.13 -90.61 -0.56 -2.15 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.17 -1.89 9.82 -26.73 -0.26 -2.16 16 5 C -0.16 -1.90 5.57 -90.62 -0.50 -2.40 16 6 H 0.10 1.23 8.04 -51.93 -0.42 0.81 16 7 C 0.17 2.64 5.17 -4.04 -0.02 2.61 16 8 N -0.76 -13.76 5.70 -58.50 -0.33 -14.09 16 9 C 0.09 2.08 6.67 -83.69 -0.56 1.52 16 10 C -0.16 -3.97 9.23 -39.77 -0.37 -4.34 16 11 C -0.12 -3.33 8.63 -39.26 -0.34 -3.67 16 12 C 0.07 2.04 5.57 -106.80 -0.59 1.45 16 13 C -0.47 -12.93 9.03 -37.87 -0.34 -13.27 16 14 H 0.07 1.92 7.91 -52.48 -0.41 1.51 16 15 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 16 N -0.81 -21.80 10.98 55.54 0.61 -21.19 16 17 Si 0.90 19.46 29.59 -169.99 -5.03 14.43 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 22 C -0.16 -3.69 9.82 -39.77 -0.39 -4.08 16 23 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 27 H 0.09 1.06 8.03 -51.93 -0.42 0.65 16 28 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 29 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 30 H 0.38 6.18 8.40 -40.82 -0.34 5.84 16 31 H 0.09 1.93 6.68 -52.49 -0.35 1.57 16 32 H 0.12 3.26 6.18 -52.48 -0.32 2.93 16 33 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 293.90 15.07 4.43 4.43 Total: -1.00 -28.50 293.90 -9.51 -38.00 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.15 Total: 8.80 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -4.03 Total: -30.38 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.28 Total: -35.28 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.50 -9.51 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336769842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.255 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds