Wall clock time and date at job start Sun Mar 29 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.55245 * 2 1 4 4 C 1.53006 * 117.50028 * 214.33257 * 2 1 3 5 5 C 1.53001 * 60.00131 * 252.51031 * 4 2 1 6 6 H 1.08993 * 117.49435 * 107.48973 * 5 4 2 7 7 C 1.53001 * 117.49838 * 252.51150 * 5 4 2 8 8 N 1.46502 * 109.46860 * 243.62403 * 7 5 4 9 9 C 1.38857 * 119.99734 * 180.02562 * 8 7 5 10 10 C 1.39570 * 119.84210 * 359.71938 * 9 8 7 11 11 C 1.36343 * 120.15498 * 179.72211 * 10 9 8 12 12 C 1.40883 * 119.83686 * 0.55647 * 11 10 9 13 13 C 1.41138 * 120.14990 * 179.70237 * 12 11 10 14 14 H 1.08004 * 119.99900 * 155.11375 * 13 12 11 15 15 C 1.39862 * 120.00269 * 335.10376 * 13 12 11 16 16 N 1.30904 * 120.00161 * 342.13615 * 15 13 12 17 17 Si 1.86796 * 120.00058 * 162.13430 * 15 13 12 18 18 H 1.48500 * 109.47612 * 94.65264 * 17 15 13 19 19 H 1.48504 * 109.47220 * 214.65443 * 17 15 13 20 20 H 1.48502 * 109.47170 * 334.65326 * 17 15 13 21 21 C 1.40883 * 119.69432 * 359.71749 * 12 11 10 22 22 C 1.36345 * 119.83278 * 0.02562 * 21 12 11 23 23 H 1.08999 * 109.46907 * 154.27390 * 1 2 3 24 24 H 1.08997 * 109.47087 * 34.28025 * 1 2 3 25 25 H 1.08998 * 109.47044 * 274.27203 * 1 2 3 26 26 H 1.08996 * 117.49781 * 0.02562 * 4 2 1 27 27 H 1.09005 * 117.49928 * 144.99471 * 4 2 1 28 28 H 1.09004 * 109.47154 * 3.61894 * 7 5 4 29 29 H 1.08997 * 109.47188 * 123.62156 * 7 5 4 30 30 H 0.96995 * 120.00163 * 359.97438 * 8 7 5 31 31 H 1.07995 * 119.92003 * 359.97438 * 10 9 8 32 32 H 1.08004 * 120.07555 * 180.27888 * 11 10 9 33 33 H 0.96999 * 120.00426 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.08435 * 180.02562 * 21 12 11 35 35 H 1.08001 * 119.92017 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1213 0.7646 6 1 1.6113 -1.8590 1.2675 7 6 3.5490 -0.7765 1.4712 8 7 4.0086 -1.9355 2.2405 9 6 5.1869 -1.8607 2.9712 10 6 5.9339 -0.6818 2.9658 11 6 7.0889 -0.5995 3.6856 12 6 7.5339 -1.7121 4.4266 13 6 8.7318 -1.6362 5.1690 14 1 8.8798 -2.2810 6.0227 15 6 9.7274 -0.7262 4.7990 16 7 9.7225 -0.2025 3.5994 17 14 11.0642 -0.2582 6.0169 18 1 12.2552 -1.1180 5.7994 19 1 11.4384 1.1652 5.8184 20 1 10.5618 -0.4495 7.4012 21 6 6.7777 -2.9007 4.4228 22 6 5.6218 -2.9670 3.7026 23 1 -0.3633 -0.9258 -0.4461 24 1 -0.3633 0.8491 -0.5788 25 1 -0.3633 0.0766 1.0248 26 1 1.6113 -1.8578 -1.2693 27 1 3.1714 -0.8746 -1.2690 28 1 4.3022 -0.5111 0.7293 29 1 3.3890 0.0660 2.1440 30 1 3.4894 -2.7548 2.2399 31 1 5.5941 0.1686 2.3934 32 1 7.6636 0.3150 3.6841 33 1 10.4131 0.4283 3.3426 34 1 7.1127 -3.7573 4.9889 35 1 5.0412 -3.8777 3.6984 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336769842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:42 Heat of formation + Delta-G solvation = 20.604853 kcal Electronic energy + Delta-G solvation = -15093.184323 eV Core-core repulsion = 12669.361478 eV Total energy + Delta-G solvation = -2423.822845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93453 -38.88625 -36.37604 -34.60102 -31.36501 -31.06176 -29.47856 -27.36898 -25.51828 -23.22571 -22.23527 -21.52561 -21.18553 -19.15451 -17.80567 -16.83782 -16.74986 -15.80023 -15.49125 -15.35571 -14.73113 -14.45390 -14.26292 -13.96330 -13.83321 -13.55489 -13.18161 -12.93252 -12.73138 -12.66371 -12.31157 -12.25135 -12.16419 -11.59866 -11.20085 -11.16896 -10.89149 -10.74027 -10.23261 -9.41725 -8.54955 -8.16843 -6.01107 1.10260 1.17639 1.40468 1.53141 1.59409 2.27858 2.66834 2.84610 3.02350 3.75060 3.84152 3.93991 4.04574 4.32142 4.43394 4.47595 4.49640 4.64411 4.84390 4.92756 4.94736 4.97330 5.03635 5.12727 5.21046 5.25418 5.29737 5.44901 5.45329 5.68278 5.79889 5.95683 6.18530 6.38516 6.66655 6.86416 7.08206 7.14783 7.32174 8.48611 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.053148 B = 0.004575 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.708946 B = 6118.101086 C = 6437.842776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.144 4.144 3 H 0.103 0.897 4 C -0.170 4.170 5 C -0.165 4.165 6 H 0.114 0.886 7 C 0.168 3.832 8 N -0.749 5.749 9 C 0.108 3.892 10 C -0.176 4.176 11 C -0.144 4.144 12 C 0.035 3.965 13 C -0.507 4.507 14 H 0.069 0.931 15 C 0.032 3.968 16 N -0.843 5.843 17 Si 0.977 3.023 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.261 1.261 21 C -0.195 4.195 22 C -0.165 4.165 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.397 0.603 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.282 0.718 34 H 0.099 0.901 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 0.679 -6.241 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.163 4.163 3 H 0.121 0.879 4 C -0.207 4.207 5 C -0.183 4.183 6 H 0.132 0.868 7 C 0.043 3.957 8 N -0.385 5.385 9 C 0.009 3.991 10 C -0.199 4.199 11 C -0.164 4.164 12 C 0.033 3.967 13 C -0.538 4.538 14 H 0.087 0.913 15 C -0.180 4.180 16 N -0.471 5.471 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.185 1.185 21 C -0.215 4.215 22 C -0.187 4.187 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.232 0.768 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.157 1.014 -6.479 14.701 hybrid contribution 0.836 -0.033 0.444 0.947 sum -12.322 0.982 -6.035 13.755 Atomic orbital electron populations 1.21371 0.91317 1.02723 1.02253 1.22481 0.96298 0.94296 1.03183 0.87934 1.23285 1.02680 1.01683 0.93082 1.22441 0.97730 1.03580 0.94582 0.86793 1.20617 0.93337 0.88593 0.93135 1.43894 1.24153 1.15653 1.54761 1.17494 0.89466 0.94492 0.97649 1.20241 0.97538 0.97091 1.04981 1.20855 0.95825 0.98534 1.01195 1.17821 0.93653 0.91354 0.93914 1.19605 1.00983 1.20048 1.13193 0.91313 1.26630 1.00790 0.94136 0.96467 1.69924 1.33323 1.25019 1.18819 0.85275 0.77499 0.78262 0.79090 1.18981 1.19286 1.18475 1.20775 0.98414 0.97005 1.05313 1.20121 0.98726 0.97459 1.02434 0.91885 0.91090 0.92084 0.87405 0.89311 0.94420 0.93908 0.76817 0.88018 0.88357 0.90758 0.88327 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 10.19 71.98 0.73 -0.98 16 2 C -0.14 -2.65 6.13 -10.79 -0.07 -2.72 16 3 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.17 -3.26 9.82 30.60 0.30 -2.96 16 5 C -0.16 -3.62 5.57 -10.79 -0.06 -3.68 16 6 H 0.11 2.32 8.04 -2.39 -0.02 2.30 16 7 C 0.17 4.97 5.17 86.38 0.45 5.41 16 8 N -0.75 -25.57 5.70 -338.98 -1.93 -27.50 16 9 C 0.11 4.76 6.67 38.67 0.26 5.02 16 10 C -0.18 -8.57 9.23 22.15 0.20 -8.37 16 11 C -0.14 -7.99 8.63 22.48 0.19 -7.79 16 12 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 13 C -0.51 -28.99 9.03 23.38 0.21 -28.78 16 14 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 15 C 0.03 1.69 5.13 85.22 0.44 2.13 16 16 N -0.84 -46.78 10.98 21.81 0.24 -46.54 16 17 Si 0.98 40.57 29.59 68.60 2.03 42.60 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 C -0.19 -9.96 9.74 22.48 0.22 -9.74 16 22 C -0.17 -7.41 9.82 22.15 0.22 -7.20 16 23 H 0.06 0.81 7.90 -2.39 -0.02 0.79 16 24 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 1.72 8.05 -2.39 -0.02 1.70 16 27 H 0.09 1.82 8.03 -2.38 -0.02 1.80 16 28 H 0.04 1.20 7.65 -2.38 -0.02 1.19 16 29 H 0.04 1.34 7.94 -2.39 -0.02 1.32 16 30 H 0.40 11.63 8.40 -92.71 -0.78 10.85 16 31 H 0.10 4.52 6.68 -2.91 -0.02 4.50 16 32 H 0.10 5.73 6.18 -2.91 -0.02 5.71 16 33 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 34 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -62.26 293.90 3.61 -58.65 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.29 Total: 30.53 kcal Atomic # 6 Polarization: -60.72 SS G_CDS: 2.98 Total: -57.74 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.69 Total: -74.04 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -62.26 3.61 -58.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336769842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.255 kcal (2) G-P(sol) polarization free energy of solvation -62.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds