Wall clock time and date at job start Sun Mar 29 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32574 * 1 3 3 C 1.47806 * 119.99974 * 2 1 4 4 C 1.39536 * 120.14335 * 359.72664 * 3 2 1 5 5 C 1.37976 * 119.85783 * 179.71797 * 4 3 2 6 6 C 1.38350 * 120.13910 * 0.53812 * 5 4 3 7 7 C 1.50693 * 119.85543 * 179.74273 * 6 5 4 8 8 C 1.52998 * 109.46891 * 270.01647 * 7 6 5 9 9 N 1.46901 * 109.47281 * 180.02562 * 8 7 6 10 10 C 1.46899 * 111.00344 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47484 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00180 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99939 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47087 * 60.00071 * 15 13 11 17 17 H 1.48500 * 109.47236 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47451 * 299.99847 * 15 13 11 19 19 C 1.38345 * 120.28554 * 359.75397 * 6 5 4 20 20 C 1.37971 * 120.14383 * 359.96746 * 19 6 5 21 21 H 1.08000 * 119.99448 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.00021 * 179.72207 * 1 2 3 23 23 H 1.08000 * 119.99448 * 179.97438 * 2 1 3 24 24 H 1.07995 * 120.06993 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.93070 * 180.27391 * 5 4 3 26 26 H 1.09006 * 109.47459 * 30.01708 * 7 6 5 27 27 H 1.09002 * 109.47301 * 150.02084 * 7 6 5 28 28 H 1.08999 * 109.47406 * 300.00007 * 8 7 6 29 29 H 1.08998 * 109.47483 * 59.99949 * 8 7 6 30 30 H 1.00898 * 111.00167 * 303.95996 * 9 8 7 31 31 H 1.09002 * 109.47072 * 300.00344 * 10 9 8 32 32 H 1.09005 * 109.46626 * 60.00179 * 10 9 8 33 33 H 0.97002 * 119.99389 * 180.02562 * 14 13 11 34 34 H 1.07998 * 119.92687 * 179.97438 * 19 6 5 35 35 H 1.07999 * 120.07370 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 1.3701 2.4902 -0.0058 5 6 2.0659 3.6817 0.0002 6 6 3.4494 3.6782 0.0006 7 6 4.2029 4.9832 0.0012 8 6 4.4579 5.4255 -1.4411 9 7 5.1929 6.6974 -1.4406 10 6 5.4567 7.1536 -2.8118 11 6 6.2110 8.4575 -2.7711 12 1 6.4691 8.9027 -1.8215 13 6 6.5717 9.0823 -3.9461 14 7 6.2579 8.5400 -5.1024 15 14 7.5061 10.6991 -3.8955 16 1 8.7942 10.5042 -3.1827 17 1 7.7729 11.1602 -5.2817 18 1 6.6947 11.7178 -3.1820 19 6 4.1441 2.4818 0.0001 20 6 3.4602 1.2835 0.0000 21 1 -0.5399 0.9354 -0.0004 22 1 -0.5400 -0.9353 -0.0045 23 1 1.8657 -0.9354 0.0004 24 1 0.2902 2.4942 -0.0106 25 1 1.5294 4.6190 0.0002 26 1 3.6138 5.7427 0.5154 27 1 5.1553 4.8527 0.5149 28 1 5.0469 4.6661 -1.9553 29 1 3.5055 5.5560 -1.9550 30 1 4.6975 7.4011 -0.9140 31 1 6.0525 6.4058 -3.3352 32 1 4.5113 7.2965 -3.3353 33 1 6.5121 8.9794 -5.9290 34 1 5.2240 2.4858 0.0000 35 1 4.0036 0.3502 -0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581722034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:17 Heat of formation + Delta-G solvation = 9.448281 kcal Electronic energy + Delta-G solvation = -14655.581745 eV Core-core repulsion = 12231.275114 eV Total energy + Delta-G solvation = -2424.306630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38803 -37.56771 -35.65924 -34.51963 -32.40721 -31.80749 -29.46080 -27.43238 -24.59243 -23.73119 -23.18909 -22.25602 -20.51581 -18.57259 -17.54956 -16.96139 -16.51315 -16.34582 -15.82267 -15.23158 -15.07123 -14.55746 -14.33520 -14.09806 -13.95195 -13.70734 -13.54475 -12.90004 -12.75034 -12.54336 -12.42994 -12.12132 -12.08332 -11.78796 -11.63360 -11.36915 -11.04058 -10.66961 -9.86312 -9.17997 -8.99696 -8.23742 -6.35966 0.00996 0.50388 1.41227 1.45413 1.53446 1.64718 2.39719 2.96265 3.09294 3.51919 3.83173 3.90559 4.09008 4.12356 4.19382 4.35046 4.45605 4.53789 4.57888 4.64319 4.87164 4.97876 5.03902 5.08880 5.16653 5.19674 5.25678 5.39471 5.45681 5.59650 5.70071 5.74999 5.91515 5.99267 6.10382 6.40633 6.69442 6.87031 7.35287 8.87936 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.064054 B = 0.003583 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.028291 B = 7812.783346 C = 7889.439853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.122 4.122 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.066 4.066 8 C 0.070 3.930 9 N -0.689 5.689 10 C 0.207 3.793 11 C -0.539 4.539 12 H 0.067 0.933 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.977 3.023 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.264 1.264 19 C -0.126 4.126 20 C -0.115 4.115 21 H 0.103 0.897 22 H 0.123 0.877 23 H 0.131 0.869 24 H 0.141 0.859 25 H 0.130 0.870 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.013 0.987 30 H 0.337 0.663 31 H -0.002 1.002 32 H -0.040 1.040 33 H 0.266 0.734 34 H 0.130 0.870 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.251 -14.960 11.899 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.079 4.079 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.089 4.089 7 C -0.103 4.103 8 C -0.059 4.059 9 N -0.320 5.320 10 C 0.080 3.920 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.801 3.199 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.144 4.144 20 C -0.133 4.133 21 H 0.121 0.879 22 H 0.141 0.859 23 H 0.149 0.851 24 H 0.158 0.842 25 H 0.148 0.852 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.155 0.845 31 H 0.016 0.984 32 H -0.023 1.023 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.618 -15.239 11.775 21.526 hybrid contribution -0.355 1.040 -0.808 1.364 sum -9.974 -14.199 10.967 20.527 Atomic orbital electron populations 1.24602 0.95438 1.03287 0.97720 1.21939 0.95771 0.95439 1.01932 1.19422 0.93685 0.94003 1.00786 1.21515 1.00702 0.91628 1.00155 1.21201 0.93657 0.98896 1.00634 1.20037 0.94179 0.95081 0.99602 1.20477 1.00457 0.93938 0.95466 1.21854 0.95061 0.92267 0.96760 1.60543 1.50307 1.05405 1.15726 1.19206 0.93134 0.94596 0.85103 1.21535 1.36419 1.06560 0.93187 0.91461 1.26020 0.96977 1.02127 0.94765 1.70099 1.48005 1.41347 0.98127 0.85325 0.78990 0.78383 0.77234 1.19207 1.20758 1.18904 1.21233 1.00623 0.92079 1.00419 1.21510 0.93628 0.98509 0.99619 0.87900 0.85862 0.85103 0.84154 0.85219 0.90224 0.90071 0.92940 0.96876 0.84549 0.98437 1.02273 0.92541 0.85211 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 14.15 66.67 0.94 -1.41 16 2 C -0.13 -2.20 9.91 23.65 0.23 -1.97 16 3 C -0.08 -1.70 5.87 -20.12 -0.12 -1.82 16 4 C -0.12 -2.70 9.40 22.52 0.21 -2.49 16 5 C -0.13 -3.10 9.68 22.23 0.22 -2.88 16 6 C -0.09 -2.36 5.14 -19.81 -0.10 -2.46 16 7 C -0.07 -1.89 5.60 29.85 0.17 -1.72 16 8 C 0.07 2.61 5.67 86.30 0.49 3.10 16 9 N -0.69 -30.71 6.49 -517.94 -3.36 -34.07 16 10 C 0.21 11.56 5.44 85.56 0.47 12.02 16 11 C -0.54 -31.44 9.32 25.60 0.24 -31.20 16 12 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 15 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 C -0.13 -3.12 9.68 22.23 0.22 -2.91 16 20 C -0.11 -2.53 9.79 22.52 0.22 -2.30 16 21 H 0.10 1.33 6.04 -2.91 -0.02 1.31 16 22 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 23 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 24 H 0.14 2.43 6.17 -2.91 -0.02 2.42 16 25 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 26 H 0.08 2.09 8.08 -2.38 -0.02 2.07 16 27 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.34 13.95 8.72 -89.70 -0.78 13.17 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H -0.04 -2.41 8.14 -2.38 -0.02 -2.43 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.51 301.81 2.87 -63.64 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.28 Total: 16.74 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 3.64 Total: -35.63 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.08 Total: -91.45 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.51 2.87 -63.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581722034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds