Wall clock time and date at job start Sun Mar 29 2020 21:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 112.93734 * 2 1 4 4 C 1.38234 * 120.00257 * 50.33149 * 3 2 1 5 5 C 1.38230 * 119.99864 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00326 * 0.02562 * 5 4 3 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38234 * 119.99499 * 230.35667 * 3 2 1 9 9 C 1.53936 * 113.73226 * 131.56301 * 2 1 3 10 10 N 1.48188 * 86.10138 * 90.78333 * 9 2 1 11 11 C 1.46898 * 111.07037 * 137.52108 * 10 9 2 12 12 C 1.50700 * 109.46977 * 90.56544 * 11 10 9 13 13 H 1.07998 * 120.00474 * 0.02562 * 12 11 10 14 14 C 1.37886 * 119.99666 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99860 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47126 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47057 * 119.99886 * 16 14 12 19 19 H 1.48500 * 109.47283 * 240.00444 * 16 14 12 20 20 C 1.47956 * 90.79975 * 24.59521 * 10 9 2 21 21 H 1.09001 * 109.47195 * 69.67138 * 1 2 3 22 22 H 1.09003 * 109.47135 * 189.67077 * 1 2 3 23 23 H 1.09006 * 109.46970 * 309.66916 * 1 2 3 24 24 H 1.08002 * 119.99744 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.00356 * 179.97438 * 5 4 3 26 26 H 1.08000 * 120.00616 * 179.70664 * 6 5 4 27 27 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 28 28 H 1.07997 * 120.00459 * 359.97438 * 8 3 2 29 29 H 1.09003 * 113.75840 * 205.06088 * 9 2 1 30 30 H 1.08997 * 113.76001 * 336.42185 * 9 2 1 31 31 H 1.09004 * 109.46716 * 210.55988 * 11 10 9 32 32 H 1.08997 * 109.47387 * 330.56224 * 11 10 9 33 33 H 0.97001 * 119.99969 * 180.02562 * 15 14 12 34 34 H 1.08998 * 113.76285 * 221.08790 * 20 10 9 35 35 H 1.09010 * 113.75767 * 89.72012 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1173 1.3879 0.0000 4 6 1.6829 2.3223 0.9215 5 6 2.2221 3.5951 0.9217 6 6 3.1952 3.9338 0.0002 7 6 3.6296 2.9994 -0.9212 8 6 3.0901 1.7266 -0.9219 9 6 2.1495 -0.9349 1.0544 10 7 2.1275 -1.9744 -0.0015 11 6 3.3738 -2.7520 -0.0031 12 6 3.2220 -3.9460 0.9037 13 1 2.2926 -4.1110 1.4285 14 6 4.2695 -4.8285 1.0627 15 7 5.4011 -4.6279 0.4233 16 14 4.0817 -6.3081 2.1873 17 1 2.7224 -6.3062 2.7851 18 1 4.2750 -7.5540 1.4026 19 1 5.0982 -6.2408 3.2678 20 6 2.1495 -0.9350 -1.0542 21 1 -0.3634 0.3570 -0.9637 22 1 -0.3633 -1.0131 0.1726 23 1 -0.3633 0.6561 0.7911 24 1 0.9223 2.0578 1.6412 25 1 1.8825 4.3253 1.6414 26 1 3.6131 4.9296 -0.0027 27 1 4.3896 3.2640 -1.6415 28 1 3.4294 0.9966 -1.6418 29 1 3.1536 -0.6441 1.3634 30 1 1.4893 -1.1472 1.8953 31 1 3.5893 -3.0906 -1.0166 32 1 4.1926 -2.1270 0.3530 33 1 6.1379 -5.2489 0.5349 34 1 1.4892 -1.1475 -1.8950 35 1 3.1536 -0.6442 -1.3633 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598705670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:04 Heat of formation + Delta-G solvation = 35.713886 kcal Electronic energy + Delta-G solvation = -15738.747352 eV Core-core repulsion = 13315.579684 eV Total energy + Delta-G solvation = -2423.167668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.132 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.61994 -39.25649 -35.31604 -33.52209 -31.83834 -30.64410 -29.05981 -27.14849 -26.10658 -24.06873 -23.19390 -22.09854 -19.57884 -18.61887 -18.01118 -16.74901 -16.34050 -16.09037 -15.82618 -15.37777 -15.19346 -14.43284 -14.31667 -14.00976 -13.86085 -13.37537 -13.36533 -12.91795 -12.83450 -12.77297 -12.34885 -12.23295 -12.01045 -11.89082 -11.40788 -11.34343 -11.00145 -10.64510 -9.78331 -9.67085 -9.40046 -8.24470 -6.35377 0.48645 0.54176 1.38323 1.39093 1.53465 2.38008 2.89048 3.07347 3.21116 3.44183 3.81219 4.00008 4.18527 4.22965 4.25964 4.36206 4.54863 4.62626 4.66194 4.69293 4.77998 4.89862 4.93055 5.02731 5.06930 5.15528 5.19217 5.21223 5.41274 5.57073 5.65275 5.65830 5.78225 5.79122 6.08265 6.16890 6.44628 6.79640 7.34548 8.87073 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.038823 B = 0.005749 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.050638 B = 4869.118384 C = 5093.630513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.035 4.035 3 C -0.077 4.077 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.127 4.127 8 C -0.141 4.141 9 C 0.026 3.974 10 N -0.486 5.486 11 C 0.176 3.824 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.001 3.999 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.134 0.866 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.085 0.915 31 H -0.002 1.002 32 H -0.027 1.027 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 16.618 -0.209 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.036 4.036 3 C -0.078 4.078 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.148 4.148 7 C -0.145 4.145 8 C -0.159 4.159 9 C -0.103 4.103 10 N -0.209 5.209 11 C 0.049 3.951 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.128 4.128 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.152 0.848 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.154 0.846 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.016 0.984 32 H -0.010 1.010 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.699 16.014 -0.240 17.770 hybrid contribution 1.349 -0.632 0.217 1.506 sum -6.350 15.382 -0.023 16.641 Atomic orbital electron populations 1.21491 0.90057 1.02494 1.02813 1.21175 0.97483 0.89751 0.95165 1.19795 0.96884 0.94597 0.96479 1.21204 1.00714 0.93451 0.98574 1.21470 0.96807 0.96432 0.99226 1.21479 0.97635 1.00309 0.95410 1.21398 1.00149 0.93146 0.99772 1.21325 0.97505 0.97496 0.99576 1.23898 0.99093 0.91219 0.96060 1.68484 1.34973 1.13823 1.03595 1.19880 0.86500 0.93250 0.95443 1.21462 0.99341 1.08748 1.26741 0.92238 1.25978 0.94627 1.01474 0.97739 1.70092 1.04597 1.38762 1.44220 0.85282 0.78505 0.78249 0.78271 1.18765 1.20135 1.20160 1.24129 0.99942 0.92227 0.96519 0.91333 0.92255 0.90566 0.84770 0.83498 0.83651 0.84599 0.86687 0.93902 0.89622 0.98351 1.00967 0.92593 0.89137 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 8.97 71.98 0.65 -2.25 16 2 C -0.04 -1.11 1.20 -52.28 -0.06 -1.17 16 3 C -0.08 -2.21 5.03 -19.87 -0.10 -2.31 16 4 C -0.12 -2.92 9.24 22.27 0.21 -2.71 16 5 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 6 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 7 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 8 C -0.14 -4.02 9.20 22.27 0.20 -3.81 16 9 C 0.03 1.04 7.07 86.37 0.61 1.65 16 10 N -0.49 -22.24 6.00 -910.85 -5.47 -27.71 16 11 C 0.18 9.91 4.55 85.56 0.39 10.30 16 12 C -0.52 -31.30 9.36 25.60 0.24 -31.06 16 13 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 14 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 15 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 16 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.00 0.02 6.55 86.41 0.57 0.59 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.70 8.00 -2.39 -0.02 1.68 16 23 H 0.08 1.63 6.92 -2.38 -0.02 1.62 16 24 H 0.13 2.76 7.16 -2.91 -0.02 2.74 16 25 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 26 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 27 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.12 3.40 5.78 -2.91 -0.02 3.39 16 29 H 0.04 1.85 7.44 -2.39 -0.02 1.84 16 30 H 0.09 3.20 8.10 -2.39 -0.02 3.18 16 31 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 32 H -0.03 -1.66 7.39 -2.39 -0.02 -1.67 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.09 3.10 8.10 -2.39 -0.02 3.08 16 35 H 0.06 2.24 5.74 -2.38 -0.01 2.23 16 Total: -1.00 -67.85 288.04 1.74 -66.11 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.06 Total: 9.50 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.83 Total: -37.74 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -5.18 Total: -85.44 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -67.85 1.74 -66.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598705670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.825 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds