Wall clock time and date at job start Sun Mar 29 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48498 * 109.47422 * 270.00221 * 3 2 1 5 5 H 1.48502 * 109.47213 * 30.00208 * 3 2 1 6 6 H 1.48503 * 109.47262 * 150.00124 * 3 2 1 7 7 C 1.38851 * 120.00833 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00337 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99309 * 0.02562 * 7 2 1 10 10 C 1.34725 * 117.00009 * 180.02562 * 9 7 2 11 11 O 1.21510 * 119.99980 * 0.02562 * 10 9 7 12 12 C 1.47744 * 120.00261 * 179.97438 * 10 9 7 13 13 C 1.39893 * 119.32437 * 180.02562 * 12 10 9 14 14 C 1.36977 * 119.44384 * 179.97438 * 13 12 10 15 15 C 1.39800 * 118.24768 * 359.97438 * 14 13 12 16 16 C 1.46132 * 134.22982 * 179.97438 * 15 14 13 17 17 C 1.34456 * 106.92520 * 180.02562 * 16 15 14 18 18 N 1.36728 * 110.00012 * 359.75595 * 17 16 15 19 19 H 0.96998 * 124.99629 * 180.33121 * 18 17 16 20 20 C 1.37562 * 109.99890 * 0.41646 * 18 17 16 21 21 N 1.32154 * 133.19607 * 179.88621 * 20 18 17 22 22 H 0.96994 * 120.00281 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.27987 * 359.96289 * 13 12 10 24 24 H 1.08002 * 120.87535 * 179.97438 * 14 13 12 25 25 H 1.08004 * 126.53972 * 359.97438 * 16 15 14 26 26 H 1.07997 * 124.99876 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 2.4953 2.0465 -1.4000 5 1 1.4452 2.6527 0.7001 6 1 3.5454 1.4403 0.7000 7 6 2.0083 -1.2024 -0.0005 8 1 3.0882 -1.2023 -0.0010 9 8 1.3342 -2.3700 -0.0016 10 6 2.0680 -3.4998 -0.0015 11 8 3.2815 -3.4362 -0.0001 12 6 1.3974 -4.8163 -0.0021 13 6 2.1732 -5.9804 -0.0014 14 6 1.5539 -7.2022 -0.0014 15 6 0.1563 -7.2357 -0.0014 16 6 -0.8377 -8.3069 -0.0019 17 6 -2.0468 -7.7189 -0.0022 18 7 -1.9055 -6.3589 0.0034 19 1 -2.6383 -5.7235 0.0089 20 6 -0.5711 -6.0246 -0.0017 21 7 0.0722 -4.8702 -0.0015 22 1 -0.4850 0.8400 -0.0004 23 1 3.2512 -5.9164 -0.0012 24 1 2.1302 -8.1156 -0.0013 25 1 -0.6390 -9.3685 -0.0027 26 1 -2.9908 -8.2436 -0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782366659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:31 Heat of formation + Delta-G solvation = -26.564733 kcal Electronic energy + Delta-G solvation = -15063.180314 eV Core-core repulsion = 12300.219942 eV Total energy + Delta-G solvation = -2762.960372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.52530 -41.01897 -38.75877 -37.22300 -34.43899 -34.02583 -31.20252 -30.48863 -27.73734 -25.55000 -24.10305 -22.16100 -21.57579 -19.99143 -19.34639 -18.99548 -17.43034 -16.99312 -16.80896 -16.26284 -15.87290 -15.80362 -15.13227 -14.31233 -14.16337 -14.05304 -13.64370 -13.52806 -13.00274 -12.99195 -12.40039 -12.19701 -12.06195 -11.54154 -11.46382 -10.75586 -10.44399 -9.60980 -9.00538 -8.60211 -6.38169 -0.46153 0.27662 1.31322 1.31632 1.50699 1.58202 1.76532 1.92073 2.08229 2.61024 2.79707 3.02887 3.47491 3.76204 3.86421 4.11806 4.31287 4.55097 4.71539 4.76257 4.95741 5.06491 5.21288 5.46956 5.54085 5.74001 5.93045 6.30437 6.50690 6.81724 6.93678 7.70412 8.60399 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.045131 B = 0.006330 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.270894 B = 4422.665006 C = 5033.093465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.005 4.005 3 Si 1.026 2.974 4 H -0.257 1.257 5 H -0.257 1.257 6 H -0.259 1.259 7 C -0.426 4.426 8 H 0.089 0.911 9 O -0.218 6.218 10 C 0.438 3.562 11 O -0.569 6.569 12 C 0.117 3.883 13 C -0.146 4.146 14 C -0.030 4.030 15 C -0.139 4.139 16 C -0.209 4.209 17 C 0.095 3.905 18 N -0.580 5.580 19 H 0.428 0.572 20 C 0.240 3.760 21 N -0.488 5.488 22 H 0.281 0.719 23 H 0.153 0.847 24 H 0.189 0.811 25 H 0.190 0.810 26 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 -16.755 -0.010 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.206 4.206 3 Si 0.843 3.157 4 H -0.181 1.181 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.106 0.894 9 O -0.124 6.124 10 C 0.286 3.714 11 O -0.468 6.468 12 C -0.027 4.027 13 C -0.169 4.169 14 C -0.056 4.056 15 C -0.147 4.147 16 C -0.234 4.234 17 C -0.032 4.032 18 N -0.187 5.187 19 H 0.267 0.733 20 C 0.003 3.997 21 N -0.205 5.205 22 H 0.091 0.909 23 H 0.171 0.829 24 H 0.206 0.794 25 H 0.208 0.792 26 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.686 -15.728 -0.003 16.724 hybrid contribution 0.481 0.803 -0.007 0.936 sum -5.205 -14.925 -0.010 15.807 Atomic orbital electron populations 1.70107 1.08042 1.29676 1.45290 1.26777 0.96934 1.02687 0.94209 0.84529 0.77713 0.73657 0.79767 1.18123 1.18111 1.18339 1.21715 0.92632 0.81157 1.54676 0.89374 1.84040 1.39783 1.13875 1.74671 1.21283 0.85546 0.85813 0.78747 1.90574 1.15259 1.87971 1.52959 1.19744 0.87871 0.91267 1.03841 1.21590 1.01935 0.91036 1.02315 1.21030 0.92155 0.98009 0.94385 1.20672 0.94879 0.94749 1.04380 1.22088 0.89168 0.99085 1.13020 1.22953 1.01990 0.79791 0.98431 1.41887 1.03793 1.08834 1.64208 0.73299 1.18860 0.87567 0.89709 1.03553 1.66255 1.10068 1.29839 1.14310 0.90933 0.82906 0.79370 0.79242 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.77 13.67 21.64 0.30 -55.48 15 2 C 0.00 -0.29 5.50 84.91 0.47 0.17 15 3 Si 1.03 44.96 29.55 68.60 2.03 46.99 15 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 7 C -0.43 -27.71 9.65 67.97 0.66 -27.05 15 8 H 0.09 5.69 6.86 -2.91 -0.02 5.67 15 9 O -0.22 -14.43 9.53 11.79 0.11 -14.32 15 10 C 0.44 25.69 7.87 70.34 0.55 26.24 15 11 O -0.57 -34.06 15.53 19.80 0.31 -33.75 15 12 C 0.12 5.63 6.74 41.94 0.28 5.91 15 13 C -0.15 -5.42 9.55 22.37 0.21 -5.21 15 14 C -0.03 -0.83 10.16 22.35 0.23 -0.60 15 15 C -0.14 -3.94 6.39 -20.10 -0.13 -4.06 15 16 C -0.21 -3.66 11.08 23.45 0.26 -3.40 15 17 C 0.10 1.41 11.82 83.06 0.98 2.40 15 18 N -0.58 -14.26 6.05 -192.15 -1.16 -15.42 15 19 H 0.43 9.14 8.96 -92.71 -0.83 8.31 15 20 C 0.24 8.56 8.43 134.15 1.13 9.69 15 21 N -0.49 -23.02 10.12 -181.89 -1.84 -24.86 15 22 H 0.28 15.69 8.31 -92.71 -0.77 14.92 15 23 H 0.15 5.33 7.60 -2.91 -0.02 5.31 15 24 H 0.19 3.18 8.06 -2.91 -0.02 3.16 15 25 H 0.19 1.80 8.06 -2.91 -0.02 1.78 15 26 H 0.23 0.75 8.06 -2.91 -0.02 0.72 15 Total: -1.00 -87.49 248.87 4.79 -82.70 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.41 Total: 10.06 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.64 Total: 4.09 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.71 Total: -95.76 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: 0.42 Total: -48.07 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -87.49 4.79 -82.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782366659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.134 kcal (2) G-P(sol) polarization free energy of solvation -87.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds